Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 KRT8P44-201ENST00000441609 1350 ntBASIC13.88□□□□□ -0.19
CLRN1P58418 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.88□□□□□ -0.19
CLRN1P58418 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 AL133267.1-201ENST00000398220 340 ntBASIC13.88□□□□□ -0.19
CLRN1P58418 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.88□□□□□ -0.19
CLRN1P58418 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.88□□□□□ -0.19
CLRN1P58418 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.88□□□□□ -0.19
CLRN1P58418 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.88□□□□□ -0.19
CLRN1P58418 AL512638.1-201ENST00000457493 794 ntBASIC13.88□□□□□ -0.19
CLRN1P58418 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC13.88□□□□□ -0.19
CLRN1P58418 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.88□□□□□ -0.19
CLRN1P58418 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.88□□□□□ -0.19
CLRN1P58418 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.88□□□□□ -0.19
CLRN1P58418 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.88□□□□□ -0.19
CLRN1P58418 AC015910.1-201ENST00000579400 975 ntBASIC13.88□□□□□ -0.19
CLRN1P58418 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC13.88□□□□□ -0.19
CLRN1P58418 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.88□□□□□ -0.19
CLRN1P58418 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.88□□□□□ -0.19
CLRN1P58418 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.88□□□□□ -0.19
CLRN1P58418 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLRN1P58418 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.87□□□□□ -0.19
CLRN1P58418 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 AC023024.2-201ENST00000623561 1993 ntBASIC13.87□□□□□ -0.19
CLRN1P58418 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CLRN1P58418 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.87□□□□□ -0.19
CLRN1P58418 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CLRN1P58418 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CLRN1P58418 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 AL596257.1-201ENST00000641463 2694 ntBASIC13.87□□□□□ -0.19
CLRN1P58418 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC13.87□□□□□ -0.19
CLRN1P58418 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13.87□□□□□ -0.19
CLRN1P58418 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.87□□□□□ -0.19
CLRN1P58418 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.87□□□□□ -0.19
CLRN1P58418 RPL13P2-201ENST00000440687 659 ntBASIC13.87□□□□□ -0.19
CLRN1P58418 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 KRT18P43-201ENST00000469825 1281 ntBASIC13.87□□□□□ -0.19
CLRN1P58418 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.87□□□□□ -0.19
CLRN1P58418 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 AL844908.2-201ENST00000609461 460 ntBASIC13.87□□□□□ -0.19
CLRN1P58418 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.87□□□□□ -0.19
CLRN1P58418 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
CLRN1P58418 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.87□□□□□ -0.19
CLRN1P58418 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.87□□□□□ -0.19
CLRN1P58418 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLRN1P58418 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CLRN1P58418 CELP-203ENST00000624767 2414 ntTSL 5 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms