Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH13P55290 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CDH13P55290 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH13P55290 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH13P55290 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH13P55290 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH13P55290 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH13P55290 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH13P55290 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH13P55290 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH13P55290 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH13P55290 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH13P55290 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH13P55290 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH13P55290 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH13P55290 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH13P55290 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CDH13P55290 AC026748.1-201ENST00000624349 3251 ntBASIC15.19■□□□□ 0.02
CDH13P55290 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH13P55290 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 AC211486.1-202ENST00000416371 468 ntBASIC15.19■□□□□ 0.02
CDH13P55290 BX842568.4-201ENST00000421222 227 ntBASIC15.19■□□□□ 0.02
CDH13P55290 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH13P55290 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 AC211476.1-201ENST00000503899 468 ntBASIC15.19■□□□□ 0.02
CDH13P55290 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.19■□□□□ 0.02
CDH13P55290 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH13P55290 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH13P55290 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CDH13P55290 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH13P55290 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.19■□□□□ 0.02
CDH13P55290 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH13P55290 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
CDH13P55290 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH13P55290 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH13P55290 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CDH13P55290 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH13P55290 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH13P55290 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
CDH13P55290 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CDH13P55290 AC007292.2-201ENST00000593524 1812 ntBASIC15.18■□□□□ 0.02
CDH13P55290 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH13P55290 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CDH13P55290 AL390755.1-201ENST00000623716 2027 ntBASIC15.18■□□□□ 0.02
CDH13P55290 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CDH13P55290 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH13P55290 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH13P55290 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH13P55290 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH13P55290 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH13P55290 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 AP001059.3-201ENST00000619053 235 ntBASIC15.18■□□□□ 0.02
CDH13P55290 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH13P55290 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.18■□□□□ 0.02
CDH13P55290 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.18■□□□□ 0.02
CDH13P55290 AC232323.1-201ENST00000540724 2099 ntBASIC15.18■□□□□ 0.02
CDH13P55290 REXO1L5P-201ENST00000622260 2098 ntBASIC15.18■□□□□ 0.02
CDH13P55290 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
CDH13P55290 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CDH13P55290 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CDH13P55290 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms