Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.84■□□□□ 0.61
NUP98P52948 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC18.84■□□□□ 0.61
NUP98P52948 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
NUP98P52948 DOC2GP-204ENST00000639052 2548 ntBASIC18.83■□□□□ 0.61
NUP98P52948 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.61
NUP98P52948 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.83■□□□□ 0.61
NUP98P52948 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
NUP98P52948 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
NUP98P52948 REXO1L2P-201ENST00000425429 2069 ntBASIC18.83■□□□□ 0.61
NUP98P52948 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC18.83■□□□□ 0.61
NUP98P52948 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
NUP98P52948 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NUP98P52948 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC18.83■□□□□ 0.61
NUP98P52948 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
NUP98P52948 AC023024.2-201ENST00000623561 1993 ntBASIC18.83■□□□□ 0.6
NUP98P52948 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
NUP98P52948 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.83■□□□□ 0.6
NUP98P52948 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NUP98P52948 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.83■□□□□ 0.6
NUP98P52948 MIR33B-201ENST00000385104 96 ntBASIC18.83■□□□□ 0.6
NUP98P52948 KLF2P1-201ENST00000447438 1042 ntBASIC18.83■□□□□ 0.6
NUP98P52948 RCC2P8-201ENST00000502779 1035 ntBASIC18.83■□□□□ 0.6
NUP98P52948 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.83■□□□□ 0.6
NUP98P52948 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC18.83■□□□□ 0.6
NUP98P52948 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.83■□□□□ 0.6
NUP98P52948 AC128714.1-201ENST00000637035 887 ntBASIC18.83■□□□□ 0.6
NUP98P52948 AC020658.6-201ENST00000623564 1870 ntBASIC18.83■□□□□ 0.6
NUP98P52948 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP98P52948 LILRP1-201ENST00000444199 1370 ntBASIC18.83■□□□□ 0.6
NUP98P52948 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP98P52948 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NUP98P52948 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NUP98P52948 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP98P52948 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP98P52948 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.82■□□□□ 0.6
NUP98P52948 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP98P52948 AL008707.1-201ENST00000422498 534 ntBASIC18.82■□□□□ 0.6
NUP98P52948 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC18.82■□□□□ 0.6
NUP98P52948 AL157407.1-201ENST00000435784 904 ntBASIC18.82■□□□□ 0.6
NUP98P52948 AL353637.1-201ENST00000451571 732 ntBASIC18.82■□□□□ 0.6
NUP98P52948 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.82■□□□□ 0.6
NUP98P52948 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC18.82■□□□□ 0.6
NUP98P52948 DUX4L46-201ENST00000566845 751 ntBASIC18.82■□□□□ 0.6
NUP98P52948 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.82■□□□□ 0.6
NUP98P52948 SPCS2P2-201ENST00000603270 608 ntBASIC18.82■□□□□ 0.6
NUP98P52948 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC18.82■□□□□ 0.6
NUP98P52948 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.82■□□□□ 0.6
NUP98P52948 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP98P52948 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.82■□□□□ 0.6
NUP98P52948 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP98P52948 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
NUP98P52948 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
NUP98P52948 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP98P52948 PRAL-201ENST00000624952 3286 ntBASIC18.82■□□□□ 0.6
NUP98P52948 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP98P52948 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
NUP98P52948 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
NUP98P52948 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP98P52948 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.81■□□□□ 0.6
NUP98P52948 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
NUP98P52948 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP98P52948 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.81■□□□□ 0.6
NUP98P52948 AL161670.2-201ENST00000557650 1227 ntBASIC18.81■□□□□ 0.6
NUP98P52948 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 KRT8P21-201ENST00000430398 1491 ntBASIC18.81■□□□□ 0.6
NUP98P52948 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
NUP98P52948 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
NUP98P52948 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18.81■□□□□ 0.6
NUP98P52948 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC18.81■□□□□ 0.6
NUP98P52948 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP98P52948 MIR4706-201ENST00000582134 82 ntBASIC18.81■□□□□ 0.6
NUP98P52948 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 FAM90A7P-201ENST00000382628 1395 ntBASIC18.81■□□□□ 0.6
NUP98P52948 FAM90A23P-201ENST00000400136 1395 ntBASIC18.81■□□□□ 0.6
NUP98P52948 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP98P52948 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms