Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HTTP42858 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HTTP42858 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HTTP42858 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HTTP42858 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HTTP42858 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.89■□□□□ 0.29
HTTP42858 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HTTP42858 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.89■□□□□ 0.29
HTTP42858 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.88■□□□□ 0.29
HTTP42858 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC16.88■□□□□ 0.29
HTTP42858 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 AC004066.1-201ENST00000502488 802 ntBASIC16.88■□□□□ 0.29
HTTP42858 AC007292.2-201ENST00000593524 1812 ntBASIC16.88■□□□□ 0.29
HTTP42858 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.88■□□□□ 0.29
HTTP42858 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HTTP42858 STK26-204ENST00000481105 1835 ntTSL 2 BASIC16.88■□□□□ 0.29
HTTP42858 TNRC18P3-201ENST00000441896 2691 ntBASIC16.88■□□□□ 0.29
HTTP42858 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.88■□□□□ 0.29
HTTP42858 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.88■□□□□ 0.29
HTTP42858 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC16.88■□□□□ 0.29
HTTP42858 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC16.88■□□□□ 0.29
HTTP42858 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC16.88■□□□□ 0.29
HTTP42858 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HTTP42858 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.88■□□□□ 0.29
HTTP42858 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.88■□□□□ 0.29
HTTP42858 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.88■□□□□ 0.29
HTTP42858 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC16.88■□□□□ 0.29
HTTP42858 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HTTP42858 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC16.87■□□□□ 0.29
HTTP42858 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC16.87■□□□□ 0.29
HTTP42858 AC009560.1-201ENST00000620208 434 ntBASIC16.87■□□□□ 0.29
HTTP42858 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
HTTP42858 KRT8P31-201ENST00000504812 1408 ntBASIC16.87■□□□□ 0.29
HTTP42858 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.87■□□□□ 0.29
HTTP42858 TSPY25P-201ENST00000429463 745 ntBASIC16.87■□□□□ 0.29
HTTP42858 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC16.87■□□□□ 0.29
HTTP42858 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.87■□□□□ 0.29
HTTP42858 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.87■□□□□ 0.29
HTTP42858 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.87■□□□□ 0.29
HTTP42858 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.87■□□□□ 0.29
HTTP42858 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.87■□□□□ 0.29
HTTP42858 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.87■□□□□ 0.29
HTTP42858 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC16.87■□□□□ 0.29
HTTP42858 AC004837.1-201ENST00000446267 564 ntBASIC16.87■□□□□ 0.29
HTTP42858 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC16.87■□□□□ 0.29
HTTP42858 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.87■□□□□ 0.29
HTTP42858 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.87■□□□□ 0.29
HTTP42858 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.87■□□□□ 0.29
HTTP42858 PEBP1P2-201ENST00000603980 558 ntBASIC16.87■□□□□ 0.29
HTTP42858 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.87■□□□□ 0.29
HTTP42858 AL645728.2-202ENST00000641679 227 ntBASIC16.87■□□□□ 0.29
HTTP42858 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.87■□□□□ 0.29
HTTP42858 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
HTTP42858 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HTTP42858 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.87■□□□□ 0.29
HTTP42858 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HTTP42858 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.86■□□□□ 0.29
HTTP42858 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 GCSHP3-201ENST00000431120 391 ntBASIC16.86■□□□□ 0.29
HTTP42858 ORAOV1P1-201ENST00000503108 395 ntBASIC16.86■□□□□ 0.29
HTTP42858 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.86■□□□□ 0.29
HTTP42858 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HTTP42858 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HTTP42858 SERBP1P2-201ENST00000436888 1164 ntBASIC16.86■□□□□ 0.29
HTTP42858 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.86■□□□□ 0.29
HTTP42858 AC002472.3-201ENST00000640124 621 ntBASIC16.86■□□□□ 0.29
HTTP42858 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms