Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC092364.2-201ENST00000596710 2692 ntBASIC15.78■□□□□ 0.12
COL9A1P20849 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
COL9A1P20849 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
COL9A1P20849 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 MIR648-201ENST00000385046 94 ntBASIC15.78■□□□□ 0.12
COL9A1P20849 RN7SL846P-201ENST00000467429 292 ntBASIC15.78■□□□□ 0.12
COL9A1P20849 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC15.78■□□□□ 0.12
COL9A1P20849 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.78■□□□□ 0.12
COL9A1P20849 AC013355.1-201ENST00000562625 723 ntBASIC15.78■□□□□ 0.12
COL9A1P20849 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.78■□□□□ 0.12
COL9A1P20849 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC15.78■□□□□ 0.12
COL9A1P20849 LINC00431-202ENST00000636375 159 ntBASIC15.78■□□□□ 0.12
COL9A1P20849 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.78■□□□□ 0.12
COL9A1P20849 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
COL9A1P20849 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL9A1P20849 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL9A1P20849 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL9A1P20849 TBC1D3J-201ENST00000620719 1426 ntBASIC15.77■□□□□ 0.12
COL9A1P20849 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
COL9A1P20849 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL9A1P20849 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL9A1P20849 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL9A1P20849 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL9A1P20849 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL9A1P20849 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL9A1P20849 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.77■□□□□ 0.12
COL9A1P20849 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL9A1P20849 DPM3-202ENST00000368399 517 ntBASIC15.77■□□□□ 0.12
COL9A1P20849 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC15.77■□□□□ 0.12
COL9A1P20849 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC15.77■□□□□ 0.12
COL9A1P20849 AC053503.3-201ENST00000448375 114 ntBASIC15.77■□□□□ 0.12
COL9A1P20849 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
COL9A1P20849 AC026410.1-201ENST00000507366 1101 ntBASIC15.77■□□□□ 0.12
COL9A1P20849 AP001582.1-201ENST00000525856 295 ntBASIC15.77■□□□□ 0.12
COL9A1P20849 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC15.77■□□□□ 0.12
COL9A1P20849 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
COL9A1P20849 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC15.77■□□□□ 0.12
COL9A1P20849 AC015910.1-201ENST00000579400 975 ntBASIC15.77■□□□□ 0.12
COL9A1P20849 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.77■□□□□ 0.12
COL9A1P20849 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.77■□□□□ 0.12
COL9A1P20849 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC15.77■□□□□ 0.12
COL9A1P20849 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.77■□□□□ 0.12
COL9A1P20849 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL9A1P20849 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.77■□□□□ 0.11
COL9A1P20849 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL9A1P20849 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL9A1P20849 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL9A1P20849 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL9A1P20849 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.77■□□□□ 0.11
COL9A1P20849 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL9A1P20849 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
COL9A1P20849 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL9A1P20849 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL9A1P20849 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.76■□□□□ 0.11
COL9A1P20849 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL9A1P20849 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.76■□□□□ 0.11
COL9A1P20849 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
COL9A1P20849 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
COL9A1P20849 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.76■□□□□ 0.11
COL9A1P20849 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC15.76■□□□□ 0.11
COL9A1P20849 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC15.76■□□□□ 0.11
COL9A1P20849 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 KRT18P25-201ENST00000508931 1278 ntBASIC15.76■□□□□ 0.11
COL9A1P20849 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC15.76■□□□□ 0.11
COL9A1P20849 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.76■□□□□ 0.11
COL9A1P20849 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC15.76■□□□□ 0.11
COL9A1P20849 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC15.76■□□□□ 0.11
COL9A1P20849 PMEL-214ENST00000550447 901 ntTSL 3 BASIC15.76■□□□□ 0.11
COL9A1P20849 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.76■□□□□ 0.11
COL9A1P20849 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.76■□□□□ 0.11
COL9A1P20849 RN7SL713P-201ENST00000582127 302 ntBASIC15.76■□□□□ 0.11
COL9A1P20849 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.76■□□□□ 0.11
COL9A1P20849 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
COL9A1P20849 AC006158.1-201ENST00000610661 249 ntBASIC15.76■□□□□ 0.11
COL9A1P20849 PRSS30P-206ENST00000641773 873 ntBASIC15.76■□□□□ 0.11
COL9A1P20849 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.76■□□□□ 0.11
COL9A1P20849 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL9A1P20849 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.76■□□□□ 0.11
COL9A1P20849 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.76■□□□□ 0.11
COL9A1P20849 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL9A1P20849 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms