Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 REXO1L2P-201ENST00000425429 2069 ntBASIC15.17■□□□□ 0.02
SIX3O95343 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.17■□□□□ 0.02
SIX3O95343 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 WASH3P-207ENST00000560956 1394 ntBASIC15.17■□□□□ 0.02
SIX3O95343 FO538757.1-201ENST00000623083 1397 ntBASIC15.17■□□□□ 0.02
SIX3O95343 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.17■□□□□ 0.02
SIX3O95343 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 DNAJB3-202ENST00000449667 1266 ntBASIC15.17■□□□□ 0.02
SIX3O95343 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.17■□□□□ 0.02
SIX3O95343 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.17■□□□□ 0.02
SIX3O95343 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.17■□□□□ 0.02
SIX3O95343 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
SIX3O95343 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.17■□□□□ 0.02
SIX3O95343 TEX28P1-201ENST00000613479 1221 ntBASIC15.17■□□□□ 0.02
SIX3O95343 AL138828.2-201ENST00000615812 383 ntBASIC15.17■□□□□ 0.02
SIX3O95343 TEX28P2-201ENST00000617764 1221 ntBASIC15.17■□□□□ 0.02
SIX3O95343 Z92544.3-201ENST00000624747 417 ntBASIC15.17■□□□□ 0.02
SIX3O95343 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.17■□□□□ 0.02
SIX3O95343 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
SIX3O95343 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.17■□□□□ 0.02
SIX3O95343 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
SIX3O95343 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.17■□□□□ 0.02
SIX3O95343 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SIX3O95343 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SIX3O95343 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.16■□□□□ 0.02
SIX3O95343 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.16■□□□□ 0.02
SIX3O95343 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 AL390755.1-201ENST00000623716 2027 ntBASIC15.16■□□□□ 0.02
SIX3O95343 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.16■□□□□ 0.02
SIX3O95343 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.16■□□□□ 0.02
SIX3O95343 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SIX3O95343 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 RPL13P2-201ENST00000440687 659 ntBASIC15.16■□□□□ 0.02
SIX3O95343 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SIX3O95343 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.16■□□□□ 0.02
SIX3O95343 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.16■□□□□ 0.02
SIX3O95343 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.16■□□□□ 0.02
SIX3O95343 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms