Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF40O75150 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
RNF40O75150 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RNF40O75150 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.83■□□□□ 0.28
RNF40O75150 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.83■□□□□ 0.28
RNF40O75150 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF40O75150 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RNF40O75150 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.83■□□□□ 0.28
RNF40O75150 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.83■□□□□ 0.28
RNF40O75150 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RNF40O75150 NME2P1-201ENST00000426182 414 ntBASIC16.83■□□□□ 0.28
RNF40O75150 AL353705.2-201ENST00000428243 662 ntBASIC16.83■□□□□ 0.28
RNF40O75150 SPTLC1P1-201ENST00000447199 261 ntBASIC16.83■□□□□ 0.28
RNF40O75150 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.83■□□□□ 0.28
RNF40O75150 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.83■□□□□ 0.28
RNF40O75150 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
RNF40O75150 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.83■□□□□ 0.28
RNF40O75150 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
RNF40O75150 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.83■□□□□ 0.28
RNF40O75150 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.83■□□□□ 0.28
RNF40O75150 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.83■□□□□ 0.28
RNF40O75150 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.83■□□□□ 0.28
RNF40O75150 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
RNF40O75150 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.83■□□□□ 0.28
RNF40O75150 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
RNF40O75150 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
RNF40O75150 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 AC013726.1-201ENST00000563747 2285 ntBASIC16.82■□□□□ 0.28
RNF40O75150 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
RNF40O75150 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
RNF40O75150 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF40O75150 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.82■□□□□ 0.28
RNF40O75150 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF40O75150 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF40O75150 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.82■□□□□ 0.28
RNF40O75150 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 COX5BP8-201ENST00000416911 349 ntBASIC16.82■□□□□ 0.28
RNF40O75150 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 MTND6P24-201ENST00000440466 518 ntBASIC16.82■□□□□ 0.28
RNF40O75150 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.82■□□□□ 0.28
RNF40O75150 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF40O75150 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF40O75150 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.82■□□□□ 0.28
RNF40O75150 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
RNF40O75150 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.82■□□□□ 0.28
RNF40O75150 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.82■□□□□ 0.28
RNF40O75150 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
RNF40O75150 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.81■□□□□ 0.28
RNF40O75150 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
RNF40O75150 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.81■□□□□ 0.28
RNF40O75150 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 AL035456.1-201ENST00000456064 1369 ntBASIC16.81■□□□□ 0.28
RNF40O75150 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.81■□□□□ 0.28
RNF40O75150 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
RNF40O75150 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 MEIS3P1-201ENST00000495167 958 ntBASIC16.81■□□□□ 0.28
RNF40O75150 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.81■□□□□ 0.28
RNF40O75150 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.81■□□□□ 0.28
RNF40O75150 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms