Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 NUS1P3-201ENST00000423502 862 ntBASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 MPRIPP1-201ENST00000452433 1089 ntBASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 HNRNPUP1-201ENST00000554987 333 ntBASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 AC015818.8-201ENST00000587907 1519 ntBASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 AL513523.2-202ENST00000427283 2040 ntBASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMD1Q9UGP4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 AC092364.2-201ENST00000596710 2692 ntBASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 AL138709.1-201ENST00000614840 1693 ntBASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 FXNP2-201ENST00000411625 547 ntBASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 HINT2P1-201ENST00000419438 481 ntBASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 AL590640.2-201ENST00000457038 527 ntBASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 RNA5SP486-201ENST00000515961 83 ntBASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 AL096828.3-201ENST00000615354 462 ntBASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIMD1Q9UGP4 AC132872.4-202ENST00000622924 2756 ntBASIC16.15■□□□□ 0.18
LIMD1Q9UGP4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LIMD1Q9UGP4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
LIMD1Q9UGP4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.15■□□□□ 0.18
LIMD1Q9UGP4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIMD1Q9UGP4 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LIMD1Q9UGP4 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIMD1Q9UGP4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms