Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLCF1Q9UBD9 AP003680.1-201ENST00000598970 3660 ntBASIC13.77□□□□□ -0.21
CLCF1Q9UBD9 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CLCF1Q9UBD9 LINC02199-201ENST00000506655 2702 ntBASIC13.77□□□□□ -0.21
CLCF1Q9UBD9 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CLCF1Q9UBD9 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 KLF2P4-201ENST00000451959 1225 ntBASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 GNRHR2-203ENST00000581100 1187 ntBASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 DOC2GP-204ENST00000639052 2548 ntBASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 AC092127.1-201ENST00000567093 3455 ntBASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.76□□□□□ -0.21
CLCF1Q9UBD9 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 AL365203.3-201ENST00000609742 2057 ntBASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 AC093525.8-201ENST00000624099 1342 ntBASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 RPS2P32-201ENST00000439199 892 ntBASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 CTBP2P5-201ENST00000454986 1264 ntBASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 FTH1P14-201ENST00000482930 551 ntBASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 KRT18P25-201ENST00000508931 1278 ntBASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CLCF1Q9UBD9 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms