Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 HLA-K-203ENST00000430151 1046 ntBASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 AC091271.1-201ENST00000611877 1162 ntBASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 ENPP7P14-201ENST00000621765 1040 ntBASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.39■□□□□ 0.21
PAAF1Q9BRP4 KRT8P44-201ENST00000441609 1350 ntBASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 TPM3P8-201ENST00000330554 643 ntBASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AC104457.1-201ENST00000401024 814 ntBASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AC099548.2-209ENST00000480264 625 ntBASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AC004466.1-201ENST00000599515 1080 ntBASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AL354989.2-201ENST00000435838 1540 ntBASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.38■□□□□ 0.21
PAAF1Q9BRP4 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
PAAF1Q9BRP4 RPL5P21-201ENST00000404620 815 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms