Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 AC022616.1-201ENST00000518688 554 ntBASIC15.3■□□□□ 0.04
TTC28Q96AY4 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 LY6E-215ENST00000523847 427 ntTSL 3 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 AC140113.1-201ENST00000603467 169 ntBASIC15.29■□□□□ 0.04
TTC28Q96AY4 AC067852.2-201ENST00000590513 2313 ntBASIC15.29■□□□□ 0.04
TTC28Q96AY4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 BICD1-207ENST00000551848 1962 ntBASIC15.29■□□□□ 0.04
TTC28Q96AY4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 RN7SKP109-201ENST00000410592 316 ntBASIC15.29■□□□□ 0.04
TTC28Q96AY4 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 PPIA-208ENST00000489459 907 ntTSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 PPIA-210ENST00000620047 827 ntTSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 AP000769.1-203ENST00000637245 208 ntBASIC15.29■□□□□ 0.04
TTC28Q96AY4 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 AC005052.1-201ENST00000625181 2492 ntBASIC15.29■□□□□ 0.04
TTC28Q96AY4 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 MARK2P16-201ENST00000605714 1723 ntBASIC15.29■□□□□ 0.04
TTC28Q96AY4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC15.29■□□□□ 0.04
TTC28Q96AY4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TTC28Q96AY4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AL356000.1-201ENST00000441073 1238 ntBASIC15.28■□□□□ 0.04
TTC28Q96AY4 RHOQP2-201ENST00000449922 579 ntBASIC15.28■□□□□ 0.04
TTC28Q96AY4 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 RHEB-207ENST00000496004 744 ntTSL 2 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC006986.1-201ENST00000612764 241 ntBASIC15.28■□□□□ 0.04
TTC28Q96AY4 AC005865.2-202ENST00000635814 725 ntBASIC15.28■□□□□ 0.04
TTC28Q96AY4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.28■□□□□ 0.04
TTC28Q96AY4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TTC28Q96AY4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms