Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB4Q8WW32 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB4Q8WW32 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AC148477.4-201ENST00000613430 1793 ntBASIC15.49■□□□□ 0.07
HMGB4Q8WW32 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AC015818.8-201ENST00000587907 1519 ntBASIC15.49■□□□□ 0.07
HMGB4Q8WW32 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 SLC25A24P2-201ENST00000415059 510 ntBASIC15.49■□□□□ 0.07
HMGB4Q8WW32 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 CALR4P-201ENST00000431943 946 ntBASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 IGHJ2P-201ENST00000454480 60 ntBASIC15.49■□□□□ 0.07
HMGB4Q8WW32 RPSAP36-202ENST00000494591 1261 ntBASIC15.49■□□□□ 0.07
HMGB4Q8WW32 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.49■□□□□ 0.07
HMGB4Q8WW32 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AC244452.3-201ENST00000636814 210 ntBASIC15.49■□□□□ 0.07
HMGB4Q8WW32 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
HMGB4Q8WW32 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms