Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.33□□□□□ -0.28
ABCA4P78363 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA4P78363 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA4P78363 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.33□□□□□ -0.28
ABCA4P78363 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.33□□□□□ -0.28
ABCA4P78363 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.33□□□□□ -0.28
ABCA4P78363 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
ABCA4P78363 AL138709.1-201ENST00000614840 1693 ntBASIC13.33□□□□□ -0.28
ABCA4P78363 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
ABCA4P78363 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
ABCA4P78363 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
ABCA4P78363 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA4P78363 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA4P78363 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 RNU1-114P-201ENST00000365297 166 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 AC079178.1-201ENST00000420915 656 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 BX284668.4-201ENST00000453917 508 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC13.32□□□□□ -0.28
ABCA4P78363 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.32□□□□□ -0.28
ABCA4P78363 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
ABCA4P78363 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 PCDHA14-201ENST00000506751 2298 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.32□□□□□ -0.28
ABCA4P78363 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA4P78363 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA4P78363 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.32□□□□□ -0.28
ABCA4P78363 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA4P78363 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.32□□□□□ -0.28
ABCA4P78363 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
ABCA4P78363 KRT18P25-201ENST00000508931 1278 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.32□□□□□ -0.28
ABCA4P78363 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA4P78363 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.32□□□□□ -0.28
ABCA4P78363 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.32□□□□□ -0.28
ABCA4P78363 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 AC006453.4-201ENST00000636949 1252 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
ABCA4P78363 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.32□□□□□ -0.28
ABCA4P78363 KRT8P35-201ENST00000483942 1338 ntBASIC13.32□□□□□ -0.28
ABCA4P78363 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.31□□□□□ -0.28
ABCA4P78363 AL138799.1-201ENST00000448213 1675 ntBASIC13.31□□□□□ -0.28
ABCA4P78363 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA4P78363 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
ABCA4P78363 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
ABCA4P78363 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA4P78363 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
ABCA4P78363 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
ABCA4P78363 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.31□□□□□ -0.28
ABCA4P78363 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms