Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RNF4P78317 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.35□□□□□ -0.11
RNF4P78317 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.35□□□□□ -0.11
RNF4P78317 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RNF4P78317 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.35□□□□□ -0.11
RNF4P78317 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.35□□□□□ -0.11
RNF4P78317 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 AC132938.2-201ENST00000579188 680 ntBASIC14.35□□□□□ -0.11
RNF4P78317 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 AL591163.1-201ENST00000641757 987 ntBASIC14.35□□□□□ -0.11
RNF4P78317 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RNF4P78317 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
RNF4P78317 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.35□□□□□ -0.11
RNF4P78317 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
RNF4P78317 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.35□□□□□ -0.11
RNF4P78317 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
RNF4P78317 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RNF4P78317 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 AC132872.4-202ENST00000622924 2756 ntBASIC14.34□□□□□ -0.11
RNF4P78317 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RNF4P78317 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.34□□□□□ -0.11
RNF4P78317 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.34□□□□□ -0.11
RNF4P78317 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 AL122018.1-201ENST00000446607 2310 ntBASIC14.34□□□□□ -0.11
RNF4P78317 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.34□□□□□ -0.11
RNF4P78317 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.34□□□□□ -0.11
RNF4P78317 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.34□□□□□ -0.11
RNF4P78317 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.34□□□□□ -0.11
RNF4P78317 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.34□□□□□ -0.11
RNF4P78317 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 IGHV3-72-202ENST00000621503 303 ntBASIC14.34□□□□□ -0.11
RNF4P78317 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.34□□□□□ -0.11
RNF4P78317 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.34□□□□□ -0.11
RNF4P78317 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.34□□□□□ -0.11
RNF4P78317 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RNF4P78317 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.34□□□□□ -0.11
RNF4P78317 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RNF4P78317 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.34□□□□□ -0.11
RNF4P78317 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RNF4P78317 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RNF4P78317 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
RNF4P78317 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.11
RNF4P78317 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
RNF4P78317 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms