Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.22■□□□□ 0.19
HDAC4P56524 MIR661-201ENST00000384842 89 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.22■□□□□ 0.19
HDAC4P56524 BCRP1-201ENST00000444246 691 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 GNAQP1-201ENST00000444815 1067 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.22■□□□□ 0.19
HDAC4P56524 DOC2GP-202ENST00000514950 1163 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.22■□□□□ 0.19
HDAC4P56524 AC023310.3-201ENST00000557027 670 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.22■□□□□ 0.19
HDAC4P56524 AC100756.1-201ENST00000562736 682 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 AC138749.3-201ENST00000567691 622 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.22■□□□□ 0.19
HDAC4P56524 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.22■□□□□ 0.19
HDAC4P56524 AL355385.1-201ENST00000606123 409 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 AC116165.1-201ENST00000611806 668 ntBASIC16.22■□□□□ 0.19
HDAC4P56524 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.22■□□□□ 0.19
HDAC4P56524 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.22■□□□□ 0.19
HDAC4P56524 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HDAC4P56524 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HDAC4P56524 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.21■□□□□ 0.19
HDAC4P56524 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HDAC4P56524 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
HDAC4P56524 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
HDAC4P56524 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.21■□□□□ 0.19
HDAC4P56524 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC4P56524 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HDAC4P56524 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC4P56524 AC023024.2-201ENST00000623561 1993 ntBASIC16.21■□□□□ 0.19
HDAC4P56524 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.21■□□□□ 0.19
HDAC4P56524 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.21■□□□□ 0.19
HDAC4P56524 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC4P56524 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.21■□□□□ 0.19
HDAC4P56524 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC4P56524 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.21■□□□□ 0.19
HDAC4P56524 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC4P56524 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.21■□□□□ 0.19
HDAC4P56524 SPCS2P1-201ENST00000561636 679 ntBASIC16.21■□□□□ 0.19
HDAC4P56524 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.21■□□□□ 0.19
HDAC4P56524 AC025181.2-201ENST00000606994 802 ntBASIC16.21■□□□□ 0.19
HDAC4P56524 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
HDAC4P56524 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.21■□□□□ 0.19
HDAC4P56524 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.21■□□□□ 0.19
HDAC4P56524 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HDAC4P56524 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
HDAC4P56524 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HDAC4P56524 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HDAC4P56524 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
HDAC4P56524 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HDAC4P56524 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
HDAC4P56524 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HDAC4P56524 AC148477.4-201ENST00000613430 1793 ntBASIC16.21■□□□□ 0.18
HDAC4P56524 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC4P56524 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC4P56524 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC4P56524 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC4P56524 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.2■□□□□ 0.18
HDAC4P56524 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.2■□□□□ 0.18
HDAC4P56524 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC4P56524 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC4P56524 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
HDAC4P56524 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HDAC4P56524 SPDYE19P-201ENST00000338590 713 ntBASIC16.2■□□□□ 0.18
HDAC4P56524 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
HDAC4P56524 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms