Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 AC004466.1-201ENST00000599515 1080 ntBASIC16.19■□□□□ 0.18
COL4A4P53420 AC105917.1-201ENST00000506637 2539 ntBASIC16.19■□□□□ 0.18
COL4A4P53420 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 CLUHP2-201ENST00000426660 1303 ntBASIC16.19■□□□□ 0.18
COL4A4P53420 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC16.18■□□□□ 0.18
COL4A4P53420 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC16.18■□□□□ 0.18
COL4A4P53420 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 IGHV3-37-201ENST00000518544 340 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 RBM8B-201ENST00000555532 525 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC16.18■□□□□ 0.18
COL4A4P53420 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.18■□□□□ 0.18
COL4A4P53420 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.18■□□□□ 0.18
COL4A4P53420 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL4A4P53420 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.18■□□□□ 0.18
COL4A4P53420 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.18■□□□□ 0.18
COL4A4P53420 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.18■□□□□ 0.18
COL4A4P53420 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC16.18■□□□□ 0.18
COL4A4P53420 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.18■□□□□ 0.18
COL4A4P53420 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 AC021723.1-201ENST00000486306 515 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 AC004066.1-201ENST00000502488 802 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL4A4P53420 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.18■□□□□ 0.18
COL4A4P53420 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.18■□□□□ 0.18
COL4A4P53420 MIR4683-201ENST00000579659 81 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.18■□□□□ 0.18
COL4A4P53420 AC009955.4-201ENST00000597192 544 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC16.18■□□□□ 0.18
COL4A4P53420 AC007881.3-201ENST00000608897 607 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 AL353770.1-201ENST00000614915 403 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 AP001065.2-201ENST00000617205 644 ntBASIC16.18■□□□□ 0.18
COL4A4P53420 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.17■□□□□ 0.18
COL4A4P53420 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL4A4P53420 SSR4P1-203ENST00000599569 2260 ntBASIC16.17■□□□□ 0.18
COL4A4P53420 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.17■□□□□ 0.18
COL4A4P53420 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.17■□□□□ 0.18
COL4A4P53420 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL4A4P53420 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.17■□□□□ 0.18
COL4A4P53420 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.17■□□□□ 0.18
COL4A4P53420 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.17■□□□□ 0.18
COL4A4P53420 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.17■□□□□ 0.18
COL4A4P53420 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL4A4P53420 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.17■□□□□ 0.18
COL4A4P53420 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
COL4A4P53420 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.17■□□□□ 0.18
COL4A4P53420 AC009779.1-201ENST00000551138 283 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms