Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.65□□□□□ -0.06
SOX3P41225 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.65□□□□□ -0.06
SOX3P41225 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.65□□□□□ -0.06
SOX3P41225 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SOX3P41225 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SOX3P41225 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.65□□□□□ -0.06
SOX3P41225 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.65□□□□□ -0.06
SOX3P41225 CRB3P1-201ENST00000449338 276 ntBASIC14.65□□□□□ -0.06
SOX3P41225 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.65□□□□□ -0.06
SOX3P41225 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
SOX3P41225 SRD5A3P1-201ENST00000603021 949 ntBASIC14.65□□□□□ -0.06
SOX3P41225 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 AC026748.1-201ENST00000624349 3251 ntBASIC14.65□□□□□ -0.06
SOX3P41225 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.65□□□□□ -0.06
SOX3P41225 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SOX3P41225 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SOX3P41225 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.65□□□□□ -0.06
SOX3P41225 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.65□□□□□ -0.07
SOX3P41225 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.64□□□□□ -0.07
SOX3P41225 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.64□□□□□ -0.07
SOX3P41225 AC007541.1-201ENST00000570282 1469 ntBASIC14.64□□□□□ -0.07
SOX3P41225 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.64□□□□□ -0.07
SOX3P41225 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 AL589987.1-201ENST00000453380 819 ntBASIC14.64□□□□□ -0.07
SOX3P41225 PHKG1P2-201ENST00000457537 863 ntBASIC14.64□□□□□ -0.07
SOX3P41225 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.64□□□□□ -0.07
SOX3P41225 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.64□□□□□ -0.07
SOX3P41225 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.64□□□□□ -0.07
SOX3P41225 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 AL450472.2-201ENST00000603663 1156 ntBASIC14.64□□□□□ -0.07
SOX3P41225 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.64□□□□□ -0.07
SOX3P41225 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
SOX3P41225 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SOX3P41225 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SOX3P41225 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.64□□□□□ -0.07
SOX3P41225 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms