Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.02□□□□□ -0.48
HOXD3P31249 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 CICP13-201ENST00000422015 2789 ntBASIC12.02□□□□□ -0.48
HOXD3P31249 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.02□□□□□ -0.48
HOXD3P31249 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
HOXD3P31249 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC12.02□□□□□ -0.48
HOXD3P31249 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.48
HOXD3P31249 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HOXD3P31249 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HOXD3P31249 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HOXD3P31249 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 MGST3-203ENST00000367885 680 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXD3P31249 RPF1-202ENST00000370656 724 ntTSL 2 BASIC12.02□□□□□ -0.49
HOXD3P31249 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC12.02□□□□□ -0.49
HOXD3P31249 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC12.02□□□□□ -0.49
HOXD3P31249 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC12.02□□□□□ -0.49
HOXD3P31249 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 RN7SL399P-201ENST00000471648 279 ntBASIC12.02□□□□□ -0.49
HOXD3P31249 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HOXD3P31249 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC12.02□□□□□ -0.49
HOXD3P31249 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
HOXD3P31249 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC12.02□□□□□ -0.49
HOXD3P31249 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 RN7SL219P-201ENST00000582872 296 ntBASIC12.02□□□□□ -0.49
HOXD3P31249 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 BTNL10-201ENST00000595971 695 ntBASIC12.02□□□□□ -0.49
HOXD3P31249 AL391069.4-201ENST00000609583 481 ntBASIC12.02□□□□□ -0.49
HOXD3P31249 RPS24-214ENST00000613865 538 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
HOXD3P31249 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
HOXD3P31249 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HOXD3P31249 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 AC092127.1-201ENST00000567093 3455 ntBASIC12.02□□□□□ -0.49
HOXD3P31249 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.02□□□□□ -0.49
HOXD3P31249 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.02□□□□□ -0.49
HOXD3P31249 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HOXD3P31249 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXD3P31249 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXD3P31249 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
HOXD3P31249 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXD3P31249 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.01□□□□□ -0.49
HOXD3P31249 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 AL133267.1-201ENST00000398220 340 ntBASIC12.01□□□□□ -0.49
HOXD3P31249 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC12.01□□□□□ -0.49
HOXD3P31249 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.01□□□□□ -0.49
HOXD3P31249 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXD3P31249 FAM86LP-201ENST00000478302 853 ntBASIC12.01□□□□□ -0.49
HOXD3P31249 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC12.01□□□□□ -0.49
HOXD3P31249 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC12.01□□□□□ -0.49
HOXD3P31249 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.01□□□□□ -0.49
HOXD3P31249 MIR4525-201ENST00000580000 75 ntBASIC12.01□□□□□ -0.49
HOXD3P31249 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC12.01□□□□□ -0.49
HOXD3P31249 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.01□□□□□ -0.49
HOXD3P31249 WNT11-204ENST00000621122 789 ntTSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 CU634019.7-201ENST00000624153 1185 ntBASIC12.01□□□□□ -0.49
HOXD3P31249 FP236241.2-201ENST00000624906 1185 ntBASIC12.01□□□□□ -0.49
HOXD3P31249 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HOXD3P31249 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HOXD3P31249 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms