Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL5A1P20908 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL5A1P20908 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
COL5A1P20908 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 AC127383.1-201ENST00000444697 1800 ntBASIC14.54□□□□□ -0.08
COL5A1P20908 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.54□□□□□ -0.08
COL5A1P20908 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC14.54□□□□□ -0.08
COL5A1P20908 NOC2LP1-201ENST00000450578 752 ntBASIC14.54□□□□□ -0.08
COL5A1P20908 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
COL5A1P20908 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 RN7SL555P-201ENST00000584742 339 ntBASIC14.54□□□□□ -0.08
COL5A1P20908 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.54□□□□□ -0.08
COL5A1P20908 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
COL5A1P20908 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 AL353770.1-201ENST00000614915 403 ntBASIC14.54□□□□□ -0.08
COL5A1P20908 Z98259.2-201ENST00000641583 609 ntBASIC14.54□□□□□ -0.08
COL5A1P20908 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL5A1P20908 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.53□□□□□ -0.08
COL5A1P20908 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
COL5A1P20908 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL5A1P20908 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.53□□□□□ -0.08
COL5A1P20908 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.53□□□□□ -0.08
COL5A1P20908 AC104784.1-201ENST00000473096 294 ntBASIC14.53□□□□□ -0.08
COL5A1P20908 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC14.53□□□□□ -0.08
COL5A1P20908 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC14.53□□□□□ -0.08
COL5A1P20908 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.53□□□□□ -0.08
COL5A1P20908 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
COL5A1P20908 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.53□□□□□ -0.08
COL5A1P20908 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL5A1P20908 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.53□□□□□ -0.08
COL5A1P20908 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
COL5A1P20908 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.53□□□□□ -0.08
COL5A1P20908 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.53□□□□□ -0.08
COL5A1P20908 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
COL5A1P20908 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL5A1P20908 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.53□□□□□ -0.08
COL5A1P20908 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.53□□□□□ -0.08
COL5A1P20908 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL5A1P20908 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC14.52□□□□□ -0.08
COL5A1P20908 VDAC1P1-201ENST00000439229 848 ntBASIC14.52□□□□□ -0.08
COL5A1P20908 AC019193.1-201ENST00000506678 823 ntBASIC14.52□□□□□ -0.08
COL5A1P20908 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 RN7SL163P-201ENST00000583100 276 ntBASIC14.52□□□□□ -0.08
COL5A1P20908 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
COL5A1P20908 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.52□□□□□ -0.08
COL5A1P20908 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.52□□□□□ -0.08
COL5A1P20908 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 TNRC18P3-201ENST00000441896 2691 ntBASIC14.52□□□□□ -0.08
COL5A1P20908 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.08
COL5A1P20908 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL5A1P20908 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL5A1P20908 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.52□□□□□ -0.09
COL5A1P20908 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.52□□□□□ -0.09
COL5A1P20908 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
COL5A1P20908 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms