Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 MPV17-205ENST00000402310 906 ntTSL 5 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 MIR1202-201ENST00000408529 83 ntBASIC18.17■□□□□ 0.5
HLA-DOAP06340 RPL13AP20-201ENST00000459725 609 ntBASIC18.17■□□□□ 0.5
HLA-DOAP06340 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 AGER-214ENST00000538695 487 ntTSL 2 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 ECM1P1-201ENST00000604092 1279 ntBASIC18.17■□□□□ 0.5
HLA-DOAP06340 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DOAP06340 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 FLJ16779-201ENST00000612722 7638 ntBASIC18.17■□□□□ 0.5
HLA-DOAP06340 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
HLA-DOAP06340 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 AP005117.1-202ENST00000581724 1908 ntBASIC18.16■□□□□ 0.5
HLA-DOAP06340 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 AL391005.1-201ENST00000623953 2435 ntBASIC18.16■□□□□ 0.5
HLA-DOAP06340 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
HLA-DOAP06340 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DOAP06340 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DOAP06340 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DOAP06340 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DOAP06340 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DOAP06340 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DOAP06340 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DOAP06340 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HLA-DOAP06340 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DOAP06340 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DOAP06340 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms