Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 AC027237.1-201ENST00000560942 655 ntBASIC22.65■■□□□ 1.22
RAPGEF3O95398 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC22.65■■□□□ 1.22
RAPGEF3O95398 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RAPGEF3O95398 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC22.65■■□□□ 1.22
RAPGEF3O95398 AC087392.5-201ENST00000612517 489 ntBASIC22.65■■□□□ 1.22
RAPGEF3O95398 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RAPGEF3O95398 CMC2-224ENST00000630396 481 ntTSL 5 BASIC22.65■■□□□ 1.22
RAPGEF3O95398 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RAPGEF3O95398 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RAPGEF3O95398 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
RAPGEF3O95398 AC012313.1-201ENST00000593393 3059 ntBASIC22.65■■□□□ 1.22
RAPGEF3O95398 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RAPGEF3O95398 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
RAPGEF3O95398 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
RAPGEF3O95398 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC22.65■■□□□ 1.22
RAPGEF3O95398 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC22.65■■□□□ 1.22
RAPGEF3O95398 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RAPGEF3O95398 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC22.64■■□□□ 1.22
RAPGEF3O95398 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RAPGEF3O95398 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
RAPGEF3O95398 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC22.64■■□□□ 1.22
RAPGEF3O95398 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RAPGEF3O95398 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RAPGEF3O95398 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
RAPGEF3O95398 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 MIR3180-2-201ENST00000581748 88 ntBASIC22.64■■□□□ 1.21
RAPGEF3O95398 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 AC009884.2-201ENST00000603110 324 ntBASIC22.64■■□□□ 1.21
RAPGEF3O95398 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 SP100-205ENST00000409824 1802 ntTSL 5 BASIC22.64■■□□□ 1.21
RAPGEF3O95398 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RAPGEF3O95398 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
RAPGEF3O95398 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 NHP2-202ENST00000314397 599 ntTSL 2 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RAPGEF3O95398 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RAPGEF3O95398 AC004837.1-201ENST00000446267 564 ntBASIC22.63■■□□□ 1.21
RAPGEF3O95398 AC024293.1-201ENST00000467930 498 ntBASIC22.63■■□□□ 1.21
RAPGEF3O95398 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RAPGEF3O95398 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 AC011247.3-201ENST00000603297 438 ntBASIC22.63■■□□□ 1.21
RAPGEF3O95398 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RAPGEF3O95398 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
RAPGEF3O95398 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC22.63■■□□□ 1.21
RAPGEF3O95398 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RAPGEF3O95398 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RAPGEF3O95398 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC22.62■■□□□ 1.21
RAPGEF3O95398 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RAPGEF3O95398 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
RAPGEF3O95398 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RAPGEF3O95398 EML3-212ENST00000494176 2901 ntTSL 2 BASIC22.62■■□□□ 1.21
RAPGEF3O95398 EML3-216ENST00000529309 2909 ntTSL 2 BASIC22.62■■□□□ 1.21
RAPGEF3O95398 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
RAPGEF3O95398 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
RAPGEF3O95398 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RAPGEF3O95398 AL807761.2-201ENST00000422849 729 ntBASIC22.62■■□□□ 1.21
RAPGEF3O95398 PSMD4P1-201ENST00000433951 1109 ntBASIC22.62■■□□□ 1.21
RAPGEF3O95398 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC22.62■■□□□ 1.21
RAPGEF3O95398 LINC00634-202ENST00000505157 222 ntBASIC22.62■■□□□ 1.21
RAPGEF3O95398 FAM86KP-201ENST00000509817 987 ntBASIC22.62■■□□□ 1.21
RAPGEF3O95398 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC22.62■■□□□ 1.21
RAPGEF3O95398 AC093752.3-201ENST00000567343 901 ntBASIC22.62■■□□□ 1.21
RAPGEF3O95398 AC008825.2-201ENST00000603374 718 ntBASIC22.62■■□□□ 1.21
RAPGEF3O95398 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
RAPGEF3O95398 AP001184.1-201ENST00000637936 376 ntBASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms