Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
SHOX2O60902 AC090505.1-201ENST00000430515 1834 ntBASIC15.54■□□□□ 0.08
SHOX2O60902 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
SHOX2O60902 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.53■□□□□ 0.08
SHOX2O60902 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.53■□□□□ 0.08
SHOX2O60902 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.53■□□□□ 0.08
SHOX2O60902 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
SHOX2O60902 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 CROT-203ENST00000419147 2959 ntTSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.53■□□□□ 0.08
SHOX2O60902 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 AC097359.3-201ENST00000603982 1210 ntBASIC15.53■□□□□ 0.08
SHOX2O60902 AL732292.2-201ENST00000609649 430 ntBASIC15.53■□□□□ 0.08
SHOX2O60902 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.53■□□□□ 0.08
SHOX2O60902 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.53■□□□□ 0.08
SHOX2O60902 OS9-218ENST00000551035 2246 ntTSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 FLJ16779-201ENST00000612722 7638 ntBASIC15.53■□□□□ 0.08
SHOX2O60902 MYO15B-237ENST00000642007 4893 ntBASIC15.53■□□□□ 0.08
SHOX2O60902 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC15.53■□□□□ 0.08
SHOX2O60902 AC006504.4-201ENST00000592118 1568 ntBASIC15.53■□□□□ 0.08
SHOX2O60902 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SHOX2O60902 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
SHOX2O60902 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
SHOX2O60902 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC15.52■□□□□ 0.08
SHOX2O60902 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.52■□□□□ 0.08
SHOX2O60902 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.52■□□□□ 0.08
SHOX2O60902 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 MIR1224-201ENST00000408193 85 ntBASIC15.52■□□□□ 0.08
SHOX2O60902 ELK2BP-201ENST00000415014 1224 ntBASIC15.52■□□□□ 0.08
SHOX2O60902 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
SHOX2O60902 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.52■□□□□ 0.08
SHOX2O60902 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.52■□□□□ 0.08
SHOX2O60902 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.52■□□□□ 0.08
SHOX2O60902 AC093458.2-201ENST00000623150 629 ntBASIC15.52■□□□□ 0.08
SHOX2O60902 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.52■□□□□ 0.08
SHOX2O60902 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHOX2O60902 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SHOX2O60902 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC15.52■□□□□ 0.07
SHOX2O60902 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SHOX2O60902 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SHOX2O60902 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SHOX2O60902 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.52■□□□□ 0.07
SHOX2O60902 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SHOX2O60902 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SHOX2O60902 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SHOX2O60902 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC15.52■□□□□ 0.07
SHOX2O60902 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.52■□□□□ 0.07
SHOX2O60902 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.52■□□□□ 0.07
SHOX2O60902 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SHOX2O60902 FAM90A12P-201ENST00000519497 2375 ntBASIC15.51■□□□□ 0.07
SHOX2O60902 FAM90A24P-201ENST00000520792 2369 ntBASIC15.51■□□□□ 0.07
SHOX2O60902 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms