Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
MSH5O43196 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH5O43196 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH5O43196 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH5O43196 TDG-209ENST00000544861 1387 ntTSL 2 BASIC21.87■■□□□ 1.09
MSH5O43196 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH5O43196 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.86■■□□□ 1.09
MSH5O43196 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 AC092119.2-201ENST00000616774 1491 ntBASIC21.86■■□□□ 1.09
MSH5O43196 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 NME2P1-201ENST00000426182 414 ntBASIC21.86■■□□□ 1.09
MSH5O43196 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC21.86■■□□□ 1.09
MSH5O43196 AL096677.1-201ENST00000442884 814 ntTSL 3 BASIC21.86■■□□□ 1.09
MSH5O43196 AL359385.1-201ENST00000456509 365 ntBASIC21.86■■□□□ 1.09
MSH5O43196 RN7SL692P-201ENST00000464677 288 ntBASIC21.86■■□□□ 1.09
MSH5O43196 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
MSH5O43196 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC21.86■■□□□ 1.09
MSH5O43196 C8orf44-205ENST00000521889 598 ntAPPRIS ALT2 TSL 3 BASIC21.86■■□□□ 1.09
MSH5O43196 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH5O43196 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC21.86■■□□□ 1.09
MSH5O43196 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH5O43196 AL596325.1-201ENST00000563991 1082 ntBASIC21.86■■□□□ 1.09
MSH5O43196 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 AP005136.1-201ENST00000579765 429 ntBASIC21.86■■□□□ 1.09
MSH5O43196 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC21.86■■□□□ 1.09
MSH5O43196 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH5O43196 AC007785.3-202ENST00000601033 518 ntTSL 3 BASIC21.86■■□□□ 1.09
MSH5O43196 AP001330.5-201ENST00000607176 411 ntBASIC21.86■■□□□ 1.09
MSH5O43196 AC132216.1-201ENST00000610375 1158 ntBASIC21.86■■□□□ 1.09
MSH5O43196 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 AL662799.1-202ENST00000614205 422 ntBASIC21.86■■□□□ 1.09
MSH5O43196 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 MIR6080-201ENST00000617359 66 ntBASIC21.86■■□□□ 1.09
MSH5O43196 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH5O43196 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
MSH5O43196 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH5O43196 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH5O43196 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH5O43196 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
MSH5O43196 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
MSH5O43196 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 CDYLP1-201ENST00000419017 1458 ntBASIC21.85■■□□□ 1.09
MSH5O43196 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH5O43196 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC21.85■■□□□ 1.09
MSH5O43196 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH5O43196 LINC00443-201ENST00000421601 1170 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH5O43196 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.85■■□□□ 1.09
MSH5O43196 AC007879.1-201ENST00000435643 554 ntTSL 4 BASIC21.85■■□□□ 1.09
MSH5O43196 LMNTD1-203ENST00000445693 1285 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
MSH5O43196 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH5O43196 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH5O43196 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH5O43196 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.85■■□□□ 1.09
MSH5O43196 DNAJC19P3-201ENST00000594491 331 ntBASIC21.85■■□□□ 1.09
MSH5O43196 AL158211.3-201ENST00000607385 239 ntBASIC21.85■■□□□ 1.09
MSH5O43196 AC109347.2-201ENST00000610220 349 ntBASIC21.85■■□□□ 1.09
MSH5O43196 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
MSH5O43196 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH5O43196 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH5O43196 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 Z98755.1-201ENST00000407015 1384 ntBASIC21.85■■□□□ 1.09
MSH5O43196 HSPA8P19-201ENST00000505359 1517 ntBASIC21.85■■□□□ 1.09
MSH5O43196 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC21.85■■□□□ 1.09
MSH5O43196 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH5O43196 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms