Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
SOX1O00570 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.21■□□□□ 0.19
SOX1O00570 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX1O00570 AL158070.2-201ENST00000623713 1621 ntBASIC16.21■□□□□ 0.19
SOX1O00570 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX1O00570 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SOX1O00570 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 MIR557-201ENST00000385239 98 ntBASIC16.21■□□□□ 0.19
SOX1O00570 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
SOX1O00570 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX1O00570 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 PGAM1P12-201ENST00000505622 748 ntBASIC16.21■□□□□ 0.19
SOX1O00570 DUX4L46-201ENST00000566845 751 ntBASIC16.21■□□□□ 0.19
SOX1O00570 PHBP15-201ENST00000574228 665 ntBASIC16.21■□□□□ 0.19
SOX1O00570 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX1O00570 AC006548.2-201ENST00000605217 529 ntBASIC16.21■□□□□ 0.19
SOX1O00570 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
SOX1O00570 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.19
SOX1O00570 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SOX1O00570 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX1O00570 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
SOX1O00570 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SOX1O00570 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX1O00570 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX1O00570 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SOX1O00570 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SOX1O00570 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
SOX1O00570 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX1O00570 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 AL354861.1-201ENST00000445213 355 ntBASIC16.2■□□□□ 0.18
SOX1O00570 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC16.2■□□□□ 0.18
SOX1O00570 PMEL-214ENST00000550447 901 ntTSL 3 BASIC16.2■□□□□ 0.18
SOX1O00570 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC16.2■□□□□ 0.18
SOX1O00570 ABHD17AP9-201ENST00000561925 548 ntBASIC16.2■□□□□ 0.18
SOX1O00570 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX1O00570 RN7SL470P-201ENST00000583069 259 ntBASIC16.2■□□□□ 0.18
SOX1O00570 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
SOX1O00570 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC16.2■□□□□ 0.18
SOX1O00570 LINC01783-202ENST00000614408 828 ntBASIC16.2■□□□□ 0.18
SOX1O00570 BX284668.2-205ENST00000619677 828 ntBASIC16.2■□□□□ 0.18
SOX1O00570 AC011471.3-201ENST00000623576 402 ntBASIC16.2■□□□□ 0.18
SOX1O00570 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 AC134043.2-201ENST00000624206 2238 ntBASIC16.2■□□□□ 0.18
SOX1O00570 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.2■□□□□ 0.18
SOX1O00570 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX1O00570 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX1O00570 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SOX1O00570 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX1O00570 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 FRMPD2B-201ENST00000431305 1347 ntBASIC16.19■□□□□ 0.18
SOX1O00570 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SOX1O00570 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX1O00570 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SOX1O00570 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SOX1O00570 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
SOX1O00570 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC16.19■□□□□ 0.18
SOX1O00570 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX1O00570 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.19■□□□□ 0.18
SOX1O00570 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC16.19■□□□□ 0.18
SOX1O00570 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms