Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SDCBPO00560 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.27□□□□□ -0.28
SDCBPO00560 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.27□□□□□ -0.28
SDCBPO00560 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
SDCBPO00560 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.27□□□□□ -0.28
SDCBPO00560 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.27□□□□□ -0.28
SDCBPO00560 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.27□□□□□ -0.28
SDCBPO00560 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.27□□□□□ -0.28
SDCBPO00560 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
SDCBPO00560 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 FAM220BP-201ENST00000377689 816 ntBASIC13.27□□□□□ -0.29
SDCBPO00560 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC13.27□□□□□ -0.29
SDCBPO00560 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.27□□□□□ -0.29
SDCBPO00560 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
SDCBPO00560 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.27□□□□□ -0.29
SDCBPO00560 AC005829.1-201ENST00000570002 483 ntBASIC13.27□□□□□ -0.29
SDCBPO00560 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.27□□□□□ -0.29
SDCBPO00560 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.27□□□□□ -0.29
SDCBPO00560 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC13.27□□□□□ -0.29
SDCBPO00560 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.27□□□□□ -0.29
SDCBPO00560 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
SDCBPO00560 MROH4P-201ENST00000431302 1578 ntBASIC13.27□□□□□ -0.29
SDCBPO00560 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
SDCBPO00560 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SDCBPO00560 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
SDCBPO00560 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.27□□□□□ -0.29
SDCBPO00560 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.26□□□□□ -0.29
SDCBPO00560 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
SDCBPO00560 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.26□□□□□ -0.29
SDCBPO00560 ELL2P1-201ENST00000413990 1906 ntBASIC13.26□□□□□ -0.29
SDCBPO00560 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.26□□□□□ -0.29
SDCBPO00560 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SDCBPO00560 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.26□□□□□ -0.29
SDCBPO00560 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.26□□□□□ -0.29
SDCBPO00560 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms