Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM35Q9UPQ4 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 ANKRD19P-201ENST00000338192 862 ntBASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 NUS1P3-201ENST00000423502 862 ntBASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 SNX29P1-201ENST00000548357 1007 ntBASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 AL512343.1-201ENST00000605837 169 ntBASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM35Q9UPQ4 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRIM35Q9UPQ4 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
TRIM35Q9UPQ4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TRIM35Q9UPQ4 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRIM35Q9UPQ4 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC20.02■□□□□ 0.79
TRIM35Q9UPQ4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRIM35Q9UPQ4 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.02■□□□□ 0.79
TRIM35Q9UPQ4 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 AC144831.1-201ENST00000573312 2656 ntBASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 AC012508.2-201ENST00000567613 1472 ntBASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 HILS1-202ENST00000545329 423 ntBASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 AC145423.3-201ENST00000615987 467 ntBASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 KRT8P35-201ENST00000483942 1338 ntBASIC20.01■□□□□ 0.79
TRIM35Q9UPQ4 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20■□□□□ 0.79
TRIM35Q9UPQ4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms