Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 AC092552.1-201ENST00000547243 906 ntBASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 AC004233.3-201ENST00000607794 1269 ntBASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 AP002414.2-201ENST00000591780 3365 ntBASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BLOC1S4Q9NUP1 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC012508.2-201ENST00000567613 1472 ntBASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AL138799.1-201ENST00000448213 1675 ntBASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AL353779.1-201ENST00000434793 351 ntBASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC124283.3-201ENST00000570869 594 ntBASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 AJ011931.1-201ENST00000618749 2492 ntBASIC17.18■□□□□ 0.34
BLOC1S4Q9NUP1 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 CICP24-201ENST00000605464 2705 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 ELK1P1-201ENST00000485699 580 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 AC190387.1-201ENST00000551683 408 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 WASH4P-201ENST00000564273 1246 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 AC120045.2-201ENST00000567334 178 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 TMEM261P1-201ENST00000604899 340 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 INTS4P2-202ENST00000614726 2019 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 AC007431.3-201ENST00000623221 587 ntBASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BLOC1S4Q9NUP1 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms