Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 AC004987.2-201ENST00000395959 1148 ntBASIC14.96□□□□□ -0.01
VMP1Q96GC9 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VMP1Q96GC9 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.96□□□□□ -0.01
VMP1Q96GC9 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VMP1Q96GC9 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.96□□□□□ -0.02
VMP1Q96GC9 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VMP1Q96GC9 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VMP1Q96GC9 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VMP1Q96GC9 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
VMP1Q96GC9 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
VMP1Q96GC9 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
VMP1Q96GC9 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VMP1Q96GC9 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
VMP1Q96GC9 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 LINC00528-201ENST00000600723 2160 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AC087499.5-201ENST00000452760 1342 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AL136982.4-201ENST00000437689 1740 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 LINC02447-202ENST00000501888 2146 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AL691432.1-201ENST00000596308 1422 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 MIR648-201ENST00000385046 94 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 TSSK5P-201ENST00000423978 907 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AC004890.2-204ENST00000481968 304 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
VMP1Q96GC9 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 AP001282.1-201ENST00000531301 1499 ntBASIC14.95□□□□□ -0.02
VMP1Q96GC9 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VMP1Q96GC9 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms