Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 TIMM17BP1-201ENST00000545713 516 ntBASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 AC140912.1-201ENST00000577171 1054 ntBASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.77■□□□□ 0.11
SHROOM3Q8TF72 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 MIR658-201ENST00000385210 100 ntBASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 AP006294.1-201ENST00000415407 339 ntBASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 VDAC1P7-201ENST00000462417 847 ntBASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 DOC2GP-202ENST00000514950 1163 ntBASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 AC008494.3-201ENST00000606615 944 ntBASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 AC119751.2-201ENST00000504529 210 ntBASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 AC092552.1-201ENST00000547243 906 ntBASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.76■□□□□ 0.11
SHROOM3Q8TF72 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 RAB43P1-201ENST00000561790 589 ntBASIC15.75■□□□□ 0.11
SHROOM3Q8TF72 AC124283.3-201ENST00000570869 594 ntBASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms