Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 AC092364.2-201ENST00000596710 2692 ntBASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 AC010141.1-201ENST00000411585 623 ntBASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 PAM16-211ENST00000575848 518 ntTSL 3 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 NAT9-211ENST00000580632 799 ntTSL 3 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 AMT-204ENST00000427987 1646 ntTSL 5 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT28Q7Z3Y7 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 AL627231.1-201ENST00000394467 1125 ntBASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 KLF2P1-201ENST00000447438 1042 ntBASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 RN7SL8P-201ENST00000461771 266 ntBASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 WT1-AS_6.1-201ENST00000614919 121 ntBASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 AC127383.1-201ENST00000444697 1800 ntBASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT28Q7Z3Y7 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 CDC23-208ENST00000505120 455 ntTSL 3 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms