Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC20.08■□□□□ 0.8
USP54Q70EL1 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP54Q70EL1 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP54Q70EL1 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP54Q70EL1 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
USP54Q70EL1 TMBIM7P-203ENST00000641617 1718 ntBASIC20.07■□□□□ 0.8
USP54Q70EL1 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP54Q70EL1 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.07■□□□□ 0.8
USP54Q70EL1 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC20.07■□□□□ 0.8
USP54Q70EL1 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP54Q70EL1 RN7SL163P-201ENST00000583100 276 ntBASIC20.07■□□□□ 0.8
USP54Q70EL1 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC20.07■□□□□ 0.8
USP54Q70EL1 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP54Q70EL1 WARS-232ENST00000556645 2508 ntTSL 5 BASIC20.07■□□□□ 0.8
USP54Q70EL1 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC20.07■□□□□ 0.8
USP54Q70EL1 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP54Q70EL1 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC20.07■□□□□ 0.8
USP54Q70EL1 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC20.07■□□□□ 0.8
USP54Q70EL1 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC20.07■□□□□ 0.8
USP54Q70EL1 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP54Q70EL1 AC023024.2-201ENST00000623561 1993 ntBASIC20.07■□□□□ 0.8
USP54Q70EL1 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP54Q70EL1 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP54Q70EL1 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC20.07■□□□□ 0.8
USP54Q70EL1 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP54Q70EL1 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
USP54Q70EL1 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
USP54Q70EL1 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC20.07■□□□□ 0.8
USP54Q70EL1 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC20.07■□□□□ 0.8
USP54Q70EL1 AC012441.2-201ENST00000444843 739 ntBASIC20.07■□□□□ 0.8
USP54Q70EL1 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC20.07■□□□□ 0.8
USP54Q70EL1 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC20.07■□□□□ 0.8
USP54Q70EL1 CENPX-208ENST00000584347 799 ntTSL 2 BASIC20.07■□□□□ 0.8
USP54Q70EL1 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
USP54Q70EL1 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
USP54Q70EL1 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
USP54Q70EL1 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
USP54Q70EL1 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 AC092850.2-201ENST00000623821 2697 ntBASIC20.06■□□□□ 0.8
USP54Q70EL1 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC20.06■□□□□ 0.8
USP54Q70EL1 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC20.06■□□□□ 0.8
USP54Q70EL1 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC20.06■□□□□ 0.8
USP54Q70EL1 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
USP54Q70EL1 AC104073.2-201ENST00000453737 312 ntBASIC20.06■□□□□ 0.8
USP54Q70EL1 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC20.06■□□□□ 0.8
USP54Q70EL1 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC20.06■□□□□ 0.8
USP54Q70EL1 AC008805.1-201ENST00000590892 364 ntBASIC20.06■□□□□ 0.8
USP54Q70EL1 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
USP54Q70EL1 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
USP54Q70EL1 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC20.06■□□□□ 0.8
USP54Q70EL1 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP54Q70EL1 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 HLA-DQB2-231ENST00000435145 2026 ntBASIC20.05■□□□□ 0.8
USP54Q70EL1 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
USP54Q70EL1 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 HNRNPA1P41-201ENST00000397777 928 ntBASIC20.05■□□□□ 0.8
USP54Q70EL1 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC20.05■□□□□ 0.8
USP54Q70EL1 AC090857.1-201ENST00000527400 390 ntBASIC20.05■□□□□ 0.8
USP54Q70EL1 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC20.05■□□□□ 0.8
USP54Q70EL1 MIR6727-201ENST00000620702 65 ntBASIC20.05■□□□□ 0.8
USP54Q70EL1 AC133540.1-201ENST00000620845 1019 ntBASIC20.05■□□□□ 0.8
USP54Q70EL1 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
USP54Q70EL1 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC20.05■□□□□ 0.8
USP54Q70EL1 KRT8P28-201ENST00000433288 1390 ntBASIC20.05■□□□□ 0.8
USP54Q70EL1 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP54Q70EL1 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC20.04■□□□□ 0.8
USP54Q70EL1 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP54Q70EL1 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC20.04■□□□□ 0.8
USP54Q70EL1 RN7SL67P-201ENST00000492147 296 ntBASIC20.04■□□□□ 0.8
USP54Q70EL1 AC019193.1-201ENST00000506678 823 ntBASIC20.04■□□□□ 0.8
USP54Q70EL1 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC20.04■□□□□ 0.8
USP54Q70EL1 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC20.04■□□□□ 0.8
USP54Q70EL1 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC20.04■□□□□ 0.8
USP54Q70EL1 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC20.04■□□□□ 0.8
USP54Q70EL1 AC138894.2-201ENST00000602838 371 ntBASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms