Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC105339.1-204ENST00000636249 355 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 AC097376.2-205ENST00000610159 5334 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.3■□□□□ 0.04
PKNOX1P55347 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.29■□□□□ 0.04
PKNOX1P55347 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PKNOX1P55347 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.29■□□□□ 0.04
PKNOX1P55347 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.29■□□□□ 0.04
PKNOX1P55347 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 FO393414.2-201ENST00000405153 598 ntBASIC15.29■□□□□ 0.04
PKNOX1P55347 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 CEND1P1-201ENST00000451006 455 ntBASIC15.29■□□□□ 0.04
PKNOX1P55347 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.29■□□□□ 0.04
PKNOX1P55347 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.29■□□□□ 0.04
PKNOX1P55347 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.29■□□□□ 0.04
PKNOX1P55347 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.29■□□□□ 0.04
PKNOX1P55347 AC105021.1-202ENST00000570572 669 ntBASIC15.29■□□□□ 0.04
PKNOX1P55347 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.29■□□□□ 0.04
PKNOX1P55347 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.29■□□□□ 0.04
PKNOX1P55347 AC018529.1-201ENST00000613063 361 ntBASIC15.29■□□□□ 0.04
PKNOX1P55347 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PKNOX1P55347 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PKNOX1P55347 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
PKNOX1P55347 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PKNOX1P55347 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.28■□□□□ 0.04
PKNOX1P55347 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.28■□□□□ 0.04
PKNOX1P55347 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 SPDYE17-201ENST00000412399 783 ntBASIC15.28■□□□□ 0.04
PKNOX1P55347 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.28■□□□□ 0.04
PKNOX1P55347 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.28■□□□□ 0.04
PKNOX1P55347 KRT18P32-201ENST00000424695 1287 ntBASIC15.28■□□□□ 0.04
PKNOX1P55347 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PKNOX1P55347 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.28■□□□□ 0.04
PKNOX1P55347 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.28■□□□□ 0.04
PKNOX1P55347 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.28■□□□□ 0.04
PKNOX1P55347 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.28■□□□□ 0.04
PKNOX1P55347 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.28■□□□□ 0.04
PKNOX1P55347 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.28■□□□□ 0.04
PKNOX1P55347 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.28■□□□□ 0.04
PKNOX1P55347 AC005829.1-201ENST00000570002 483 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms