Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX3P41225 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.68□□□□□ -0.06
SOX3P41225 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX3P41225 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.68□□□□□ -0.06
SOX3P41225 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.68□□□□□ -0.06
SOX3P41225 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 CICP13-201ENST00000422015 2789 ntBASIC14.68□□□□□ -0.06
SOX3P41225 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 REXO1L1P-202ENST00000608646 1974 ntBASIC14.67□□□□□ -0.06
SOX3P41225 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.67□□□□□ -0.06
SOX3P41225 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.67□□□□□ -0.06
SOX3P41225 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SOX3P41225 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.67□□□□□ -0.06
SOX3P41225 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.67□□□□□ -0.06
SOX3P41225 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.67□□□□□ -0.06
SOX3P41225 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.67□□□□□ -0.06
SOX3P41225 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.67□□□□□ -0.06
SOX3P41225 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
SOX3P41225 AC074044.1-201ENST00000609673 707 ntBASIC14.67□□□□□ -0.06
SOX3P41225 AC004790.1-201ENST00000612686 536 ntBASIC14.67□□□□□ -0.06
SOX3P41225 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.67□□□□□ -0.06
SOX3P41225 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.67□□□□□ -0.06
SOX3P41225 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.67□□□□□ -0.06
SOX3P41225 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SOX3P41225 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SOX3P41225 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.67□□□□□ -0.06
SOX3P41225 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX3P41225 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 TMBIM7P-203ENST00000641617 1718 ntBASIC14.66□□□□□ -0.06
SOX3P41225 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.66□□□□□ -0.06
SOX3P41225 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.66□□□□□ -0.06
SOX3P41225 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 SPDYE19P-201ENST00000338590 713 ntBASIC14.66□□□□□ -0.06
SOX3P41225 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 PIN1P1-201ENST00000412108 996 ntBASIC14.66□□□□□ -0.06
SOX3P41225 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 DOC2GP-202ENST00000514950 1163 ntBASIC14.66□□□□□ -0.06
SOX3P41225 AC190387.1-201ENST00000551683 408 ntBASIC14.66□□□□□ -0.06
SOX3P41225 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 AL132655.2-201ENST00000596276 594 ntBASIC14.66□□□□□ -0.06
SOX3P41225 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.66□□□□□ -0.06
SOX3P41225 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.66□□□□□ -0.06
SOX3P41225 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
SOX3P41225 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SOX3P41225 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms