Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.25□□□□□ -0.13
MSX1P28360 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
MSX1P28360 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.25□□□□□ -0.13
MSX1P28360 AL121723.1-201ENST00000445194 1519 ntBASIC14.25□□□□□ -0.13
MSX1P28360 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
MSX1P28360 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
MSX1P28360 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
MSX1P28360 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
MSX1P28360 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 AC090616.6-203ENST00000579186 1945 ntBASIC14.24□□□□□ -0.13
MSX1P28360 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
MSX1P28360 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.24□□□□□ -0.13
MSX1P28360 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 AC112492.5-201ENST00000421897 457 ntBASIC14.24□□□□□ -0.13
MSX1P28360 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.24□□□□□ -0.13
MSX1P28360 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 AC036164.1-201ENST00000570544 333 ntBASIC14.24□□□□□ -0.13
MSX1P28360 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.24□□□□□ -0.13
MSX1P28360 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
MSX1P28360 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.24□□□□□ -0.13
MSX1P28360 AC010326.4-201ENST00000604665 891 ntBASIC14.24□□□□□ -0.13
MSX1P28360 AC099568.2-201ENST00000609194 695 ntBASIC14.24□□□□□ -0.13
MSX1P28360 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 AC105917.1-201ENST00000506637 2539 ntBASIC14.24□□□□□ -0.13
MSX1P28360 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.24□□□□□ -0.13
MSX1P28360 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.24□□□□□ -0.13
MSX1P28360 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.24□□□□□ -0.13
MSX1P28360 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MSX1P28360 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
MSX1P28360 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 AL161772.1-201ENST00000610494 4412 ntBASIC14.23□□□□□ -0.13
MSX1P28360 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
MSX1P28360 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.23□□□□□ -0.13
MSX1P28360 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MSX1P28360 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.23□□□□□ -0.13
MSX1P28360 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
MSX1P28360 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MSX1P28360 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.23□□□□□ -0.13
MSX1P28360 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms