Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL9A1P20849 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.13
COL9A1P20849 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL9A1P20849 LRRIQ3-203ENST00000370911 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL9A1P20849 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL9A1P20849 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
COL9A1P20849 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
COL9A1P20849 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL9A1P20849 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
COL9A1P20849 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.83■□□□□ 0.13
COL9A1P20849 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.83■□□□□ 0.12
COL9A1P20849 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
COL9A1P20849 KRT18P43-201ENST00000469825 1281 ntBASIC15.83■□□□□ 0.12
COL9A1P20849 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC15.83■□□□□ 0.12
COL9A1P20849 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC15.83■□□□□ 0.12
COL9A1P20849 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC15.83■□□□□ 0.12
COL9A1P20849 AC107373.2-201ENST00000607735 490 ntBASIC15.83■□□□□ 0.12
COL9A1P20849 AC021016.3-201ENST00000608367 477 ntBASIC15.83■□□□□ 0.12
COL9A1P20849 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
COL9A1P20849 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 AC004554.1-201ENST00000422830 1468 ntBASIC15.83■□□□□ 0.12
COL9A1P20849 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.83■□□□□ 0.12
COL9A1P20849 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL9A1P20849 AC079328.2-201ENST00000561241 3354 ntBASIC15.83■□□□□ 0.12
COL9A1P20849 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.82■□□□□ 0.12
COL9A1P20849 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 AL627231.1-201ENST00000394467 1125 ntBASIC15.82■□□□□ 0.12
COL9A1P20849 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.82■□□□□ 0.12
COL9A1P20849 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.82■□□□□ 0.12
COL9A1P20849 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 AC007919.2-201ENST00000444110 511 ntBASIC15.82■□□□□ 0.12
COL9A1P20849 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
COL9A1P20849 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.82■□□□□ 0.12
COL9A1P20849 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC15.82■□□□□ 0.12
COL9A1P20849 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC15.82■□□□□ 0.12
COL9A1P20849 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 AL627230.2-201ENST00000613254 655 ntBASIC15.82■□□□□ 0.12
COL9A1P20849 AC006213.5-201ENST00000619673 288 ntBASIC15.82■□□□□ 0.12
COL9A1P20849 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
COL9A1P20849 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.82■□□□□ 0.12
COL9A1P20849 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
COL9A1P20849 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
COL9A1P20849 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
COL9A1P20849 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL9A1P20849 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL9A1P20849 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
COL9A1P20849 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.81■□□□□ 0.12
COL9A1P20849 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC15.81■□□□□ 0.12
COL9A1P20849 RPS6P14-201ENST00000425165 719 ntBASIC15.81■□□□□ 0.12
COL9A1P20849 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.81■□□□□ 0.12
COL9A1P20849 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.81■□□□□ 0.12
COL9A1P20849 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.81■□□□□ 0.12
COL9A1P20849 PDIA3P2-201ENST00000428073 158 ntBASIC15.81■□□□□ 0.12
COL9A1P20849 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.81■□□□□ 0.12
COL9A1P20849 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 TUBB8P8-201ENST00000458717 1058 ntBASIC15.81■□□□□ 0.12
COL9A1P20849 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.81■□□□□ 0.12
COL9A1P20849 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC15.81■□□□□ 0.12
COL9A1P20849 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC15.81■□□□□ 0.12
COL9A1P20849 AC114550.1-202ENST00000522661 643 ntTSL 2 BASIC15.81■□□□□ 0.12
COL9A1P20849 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL9A1P20849 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC15.81■□□□□ 0.12
COL9A1P20849 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC15.81■□□□□ 0.12
COL9A1P20849 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms