Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.81□□□□□ -0.04
SDC1P18827 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDC1P18827 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SDC1P18827 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 AL139400.1-201ENST00000366220 510 ntBASIC14.8□□□□□ -0.04
SDC1P18827 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.8□□□□□ -0.04
SDC1P18827 DNAJB3-202ENST00000449667 1266 ntBASIC14.8□□□□□ -0.04
SDC1P18827 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
SDC1P18827 AC074044.1-201ENST00000609673 707 ntBASIC14.8□□□□□ -0.04
SDC1P18827 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.8□□□□□ -0.04
SDC1P18827 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 Z92544.3-201ENST00000624747 417 ntBASIC14.8□□□□□ -0.04
SDC1P18827 LINC00552-201ENST00000625151 2579 ntBASIC14.8□□□□□ -0.04
SDC1P18827 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 AL009178.2-201ENST00000597278 2719 ntBASIC14.8□□□□□ -0.04
SDC1P18827 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.8□□□□□ -0.04
SDC1P18827 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SDC1P18827 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 REXO1L2P-201ENST00000425429 2069 ntBASIC14.8□□□□□ -0.04
SDC1P18827 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SDC1P18827 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.8□□□□□ -0.04
SDC1P18827 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 AC023908.3-201ENST00000564211 3047 ntBASIC14.79□□□□□ -0.04
SDC1P18827 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
SDC1P18827 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.79□□□□□ -0.04
SDC1P18827 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 TSEN15P1-201ENST00000423257 515 ntBASIC14.79□□□□□ -0.04
SDC1P18827 FAM8A3P-201ENST00000427218 844 ntBASIC14.79□□□□□ -0.04
SDC1P18827 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 RN7SL618P-201ENST00000477850 296 ntBASIC14.79□□□□□ -0.04
SDC1P18827 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.79□□□□□ -0.04
SDC1P18827 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 AC051619.7-201ENST00000568314 623 ntBASIC14.79□□□□□ -0.04
SDC1P18827 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.79□□□□□ -0.04
SDC1P18827 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 AC025181.2-201ENST00000606994 802 ntBASIC14.79□□□□□ -0.04
SDC1P18827 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms