Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGB1P09429 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGB1P09429 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGB1P09429 AL589987.1-201ENST00000453380 819 ntBASIC18.3■□□□□ 0.52
HMGB1P09429 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB1P09429 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGB1P09429 AC104794.3-201ENST00000566840 1248 ntBASIC18.3■□□□□ 0.52
HMGB1P09429 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.3■□□□□ 0.52
HMGB1P09429 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.3■□□□□ 0.52
HMGB1P09429 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.3■□□□□ 0.52
HMGB1P09429 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.3■□□□□ 0.52
HMGB1P09429 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.3■□□□□ 0.52
HMGB1P09429 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 AC012508.2-201ENST00000567613 1472 ntBASIC18.3■□□□□ 0.52
HMGB1P09429 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HMGB1P09429 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HMGB1P09429 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
HMGB1P09429 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
HMGB1P09429 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB1P09429 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB1P09429 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HMGB1P09429 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 DOC2GP-202ENST00000514950 1163 ntBASIC18.29■□□□□ 0.52
HMGB1P09429 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.29■□□□□ 0.52
HMGB1P09429 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.29■□□□□ 0.52
HMGB1P09429 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 AC036164.1-201ENST00000570544 333 ntBASIC18.29■□□□□ 0.52
HMGB1P09429 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.29■□□□□ 0.52
HMGB1P09429 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.29■□□□□ 0.52
HMGB1P09429 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HMGB1P09429 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB1P09429 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HMGB1P09429 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HMGB1P09429 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HMGB1P09429 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 CLK3P2-201ENST00000427566 1453 ntBASIC18.28■□□□□ 0.52
HMGB1P09429 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HMGB1P09429 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB1P09429 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.28■□□□□ 0.52
HMGB1P09429 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGB1P09429 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
HMGB1P09429 RRP7BP-205ENST00000566851 833 ntBASIC18.28■□□□□ 0.52
HMGB1P09429 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC18.28■□□□□ 0.52
HMGB1P09429 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB1P09429 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGB1P09429 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms