Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.69■□□□□ 0.1
VIMP08670 SART3-203ENST00000546611 1184 ntBASIC15.69■□□□□ 0.1
VIMP08670 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC15.69■□□□□ 0.1
VIMP08670 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.69■□□□□ 0.1
VIMP08670 AC138894.3-201ENST00000603787 634 ntBASIC15.69■□□□□ 0.1
VIMP08670 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.69■□□□□ 0.1
VIMP08670 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
VIMP08670 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VIMP08670 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC15.69■□□□□ 0.1
VIMP08670 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC15.69■□□□□ 0.1
VIMP08670 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.69■□□□□ 0.1
VIMP08670 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 MBLAC2-202ENST00000514906 1936 ntBASIC15.68■□□□□ 0.1
VIMP08670 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
VIMP08670 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
VIMP08670 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VIMP08670 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
VIMP08670 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 CICP17-201ENST00000418553 2377 ntBASIC15.68■□□□□ 0.1
VIMP08670 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
VIMP08670 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.68■□□□□ 0.1
VIMP08670 DUSP5P1-201ENST00000441325 1139 ntBASIC15.68■□□□□ 0.1
VIMP08670 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 KRT18P34-201ENST00000488218 1270 ntBASIC15.68■□□□□ 0.1
VIMP08670 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 AC006557.2-201ENST00000592985 1240 ntBASIC15.68■□□□□ 0.1
VIMP08670 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 CICP20-201ENST00000443330 2801 ntBASIC15.68■□□□□ 0.1
VIMP08670 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VIMP08670 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
VIMP08670 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
VIMP08670 AC131212.3-201ENST00000624087 4219 ntBASIC15.67■□□□□ 0.1
VIMP08670 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VIMP08670 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VIMP08670 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.67■□□□□ 0.1
VIMP08670 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 TET3-201ENST00000305799 5174 ntTSL 5 BASIC15.67■□□□□ 0.1
VIMP08670 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VIMP08670 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
VIMP08670 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 AC243562.2-201ENST00000561247 970 ntBASIC15.67■□□□□ 0.1
VIMP08670 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.67■□□□□ 0.1
VIMP08670 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.67■□□□□ 0.1
VIMP08670 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC15.67■□□□□ 0.1
VIMP08670 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VIMP08670 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VIMP08670 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
VIMP08670 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC15.67■□□□□ 0.1
VIMP08670 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC15.67■□□□□ 0.1
VIMP08670 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VIMP08670 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.67■□□□□ 0.1
VIMP08670 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
VIMP08670 AC113367.3-201ENST00000508316 1912 ntBASIC15.66■□□□□ 0.1
VIMP08670 BNIP3P1-202ENST00000550043 1585 ntBASIC15.66■□□□□ 0.1
VIMP08670 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms