Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 PNN-202ENST00000553331 656 ntTSL 3 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 PPT1-213ENST00000641319 2388 ntBASIC11.76□□□□□ -0.53
HLA-DQA1P01909 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DQA1P01909 NSUN5P1-202ENST00000421140 1535 ntBASIC11.76□□□□□ -0.53
HLA-DQA1P01909 NSUN5P2-203ENST00000457352 1529 ntBASIC11.76□□□□□ -0.53
HLA-DQA1P01909 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 FLII-221ENST00000578558 2377 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 THAP5-204ENST00000438865 868 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AC087163.2-201ENST00000457299 853 ntBASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 NCF1C-201ENST00000438382 1427 ntBASIC11.75□□□□□ -0.53
HLA-DQA1P01909 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AC097359.2-201ENST00000604992 2389 ntBASIC11.75□□□□□ -0.53
HLA-DQA1P01909 AC079776.2-201ENST00000641154 1609 ntBASIC11.75□□□□□ -0.53
HLA-DQA1P01909 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DQA1P01909 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DQA1P01909 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms