Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS4BO75351 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 CICP24-201ENST00000605464 2705 ntBASIC15.3■□□□□ 0.04
VPS4BO75351 AC026979.3-201ENST00000607315 403 ntBASIC15.3■□□□□ 0.04
VPS4BO75351 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
VPS4BO75351 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
VPS4BO75351 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS4BO75351 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS4BO75351 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.29■□□□□ 0.04
VPS4BO75351 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VPS4BO75351 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 COX5BP8-201ENST00000416911 349 ntBASIC15.29■□□□□ 0.04
VPS4BO75351 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.29■□□□□ 0.04
VPS4BO75351 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS4BO75351 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.29■□□□□ 0.04
VPS4BO75351 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
VPS4BO75351 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 AC091951.1-201ENST00000512854 2465 ntBASIC15.29■□□□□ 0.04
VPS4BO75351 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS4BO75351 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS4BO75351 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VPS4BO75351 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS4BO75351 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS4BO75351 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS4BO75351 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 AC097376.2-205ENST00000610159 5334 ntBASIC15.28■□□□□ 0.04
VPS4BO75351 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 CU639417.3-201ENST00000624240 1404 ntBASIC15.28■□□□□ 0.04
VPS4BO75351 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VPS4BO75351 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS4BO75351 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS4BO75351 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
VPS4BO75351 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.28■□□□□ 0.04
VPS4BO75351 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.28■□□□□ 0.04
VPS4BO75351 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS4BO75351 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS4BO75351 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS4BO75351 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
VPS4BO75351 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VPS4BO75351 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS4BO75351 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms