Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC12.52□□□□□ -0.4
HOXA3O43365 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.52□□□□□ -0.4
HOXA3O43365 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.52□□□□□ -0.4
HOXA3O43365 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.52□□□□□ -0.4
HOXA3O43365 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.52□□□□□ -0.4
HOXA3O43365 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HOXA3O43365 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXA3O43365 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 BRWD1P1-201ENST00000401091 371 ntBASIC12.52□□□□□ -0.41
HOXA3O43365 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 AC099336.1-201ENST00000417053 1171 ntBASIC12.52□□□□□ -0.41
HOXA3O43365 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC12.52□□□□□ -0.41
HOXA3O43365 RPL7P3-201ENST00000441388 714 ntBASIC12.52□□□□□ -0.41
HOXA3O43365 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 AC012441.1-201ENST00000446669 685 ntBASIC12.52□□□□□ -0.41
HOXA3O43365 CSF2RBP1-201ENST00000447905 391 ntBASIC12.52□□□□□ -0.41
HOXA3O43365 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC12.52□□□□□ -0.41
HOXA3O43365 AC093433.1-201ENST00000458048 571 ntBASIC12.52□□□□□ -0.41
HOXA3O43365 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
HOXA3O43365 FTH1P14-201ENST00000482930 551 ntBASIC12.52□□□□□ -0.41
HOXA3O43365 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC12.52□□□□□ -0.41
HOXA3O43365 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC12.52□□□□□ -0.41
HOXA3O43365 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXA3O43365 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXA3O43365 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXA3O43365 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.52□□□□□ -0.41
HOXA3O43365 MIR4525-201ENST00000580000 75 ntBASIC12.52□□□□□ -0.41
HOXA3O43365 ATF5-205ENST00000600336 682 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXA3O43365 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 BANP-201ENST00000286122 2368 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXA3O43365 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXA3O43365 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC12.52□□□□□ -0.41
HOXA3O43365 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HOXA3O43365 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
HOXA3O43365 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
HOXA3O43365 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA3O43365 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA3O43365 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA3O43365 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 CES3-203ENST00000543856 3178 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXA3O43365 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HOXA3O43365 AL136379.1-201ENST00000623471 2642 ntBASIC12.51□□□□□ -0.41
HOXA3O43365 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
HOXA3O43365 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 APOC3-202ENST00000375345 604 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA3O43365 GZMB-202ENST00000382540 816 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA3O43365 AC092933.1-201ENST00000393644 945 ntBASIC12.51□□□□□ -0.41
HOXA3O43365 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
HOXA3O43365 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXA3O43365 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 AC016694.1-201ENST00000434179 700 ntBASIC12.51□□□□□ -0.41
HOXA3O43365 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
HOXA3O43365 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HOXA3O43365 AC106760.1-201ENST00000508690 800 ntBASIC12.51□□□□□ -0.41
HOXA3O43365 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXA3O43365 AP001582.1-201ENST00000525856 295 ntBASIC12.51□□□□□ -0.41
HOXA3O43365 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms