Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CLCF1Q9UBD9 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLCF1Q9UBD9 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLCF1Q9UBD9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.71■□□□□ 0.91
CLCF1Q9UBD9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.71■□□□□ 0.91
CLCF1Q9UBD9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.71■□□□□ 0.91
CLCF1Q9UBD9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLCF1Q9UBD9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.71■□□□□ 0.91
CLCF1Q9UBD9 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 AL117332.1-201ENST00000622628 974 ntBASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLCF1Q9UBD9 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CLCF1Q9UBD9 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLCF1Q9UBD9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLCF1Q9UBD9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLCF1Q9UBD9 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.69■□□□□ 0.9
CLCF1Q9UBD9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.69■□□□□ 0.9
CLCF1Q9UBD9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.69■□□□□ 0.9
CLCF1Q9UBD9 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLCF1Q9UBD9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 MIR3621-201ENST00000580529 85 ntBASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 MIR6722-201ENST00000617286 78 ntBASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLCF1Q9UBD9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 AC008406.3-201ENST00000620001 1374 ntBASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CLCF1Q9UBD9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLCF1Q9UBD9 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 AC004448.1-201ENST00000458332 883 ntBASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 AC131281.2-201ENST00000520478 145 ntBASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLCF1Q9UBD9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLCF1Q9UBD9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.64■□□□□ 0.9
CLCF1Q9UBD9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.64■□□□□ 0.9
CLCF1Q9UBD9 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.64■□□□□ 0.89
CLCF1Q9UBD9 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLCF1Q9UBD9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CLCF1Q9UBD9 AL356740.2-201ENST00000601559 647 ntBASIC20.63■□□□□ 0.89
CLCF1Q9UBD9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.63■□□□□ 0.89
CLCF1Q9UBD9 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLCF1Q9UBD9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLCF1Q9UBD9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.62■□□□□ 0.89
CLCF1Q9UBD9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.62■□□□□ 0.89
CLCF1Q9UBD9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.62■□□□□ 0.89
CLCF1Q9UBD9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CLCF1Q9UBD9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLCF1Q9UBD9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.61■□□□□ 0.89
CLCF1Q9UBD9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms