Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.41■■□□□ 1.66
LRCH3Q96II8 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.41■■□□□ 1.66
LRCH3Q96II8 TMEM191A-211ENST00000637163 1067 ntBASIC25.41■■□□□ 1.66
LRCH3Q96II8 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
LRCH3Q96II8 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
LRCH3Q96II8 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
LRCH3Q96II8 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.4■■□□□ 1.66
LRCH3Q96II8 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
LRCH3Q96II8 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
LRCH3Q96II8 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
LRCH3Q96II8 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
LRCH3Q96II8 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
LRCH3Q96II8 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
LRCH3Q96II8 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.39■■□□□ 1.66
LRCH3Q96II8 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
LRCH3Q96II8 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
LRCH3Q96II8 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
LRCH3Q96II8 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.65
LRCH3Q96II8 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
LRCH3Q96II8 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
LRCH3Q96II8 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC25.38■■□□□ 1.65
LRCH3Q96II8 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.38■■□□□ 1.65
LRCH3Q96II8 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.38■■□□□ 1.65
LRCH3Q96II8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
LRCH3Q96II8 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRCH3Q96II8 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
LRCH3Q96II8 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRCH3Q96II8 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRCH3Q96II8 YBX1P1-201ENST00000445822 960 ntBASIC25.37■■□□□ 1.65
LRCH3Q96II8 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRCH3Q96II8 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
LRCH3Q96II8 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.37■■□□□ 1.65
LRCH3Q96II8 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC25.37■■□□□ 1.65
LRCH3Q96II8 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRCH3Q96II8 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRCH3Q96II8 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRCH3Q96II8 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC25.36■■□□□ 1.65
LRCH3Q96II8 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC25.36■■□□□ 1.65
LRCH3Q96II8 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
LRCH3Q96II8 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
LRCH3Q96II8 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
LRCH3Q96II8 TK2-208ENST00000545043 1120 ntTSL 2 BASIC25.35■■□□□ 1.65
LRCH3Q96II8 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC25.35■■□□□ 1.65
LRCH3Q96II8 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC25.35■■□□□ 1.65
LRCH3Q96II8 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.35■■□□□ 1.65
LRCH3Q96II8 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.34■■□□□ 1.65
LRCH3Q96II8 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
LRCH3Q96II8 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC25.34■■□□□ 1.65
LRCH3Q96II8 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.34■■□□□ 1.65
LRCH3Q96II8 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
LRCH3Q96II8 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
LRCH3Q96II8 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
LRCH3Q96II8 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.34■■□□□ 1.65
LRCH3Q96II8 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
LRCH3Q96II8 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
LRCH3Q96II8 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
LRCH3Q96II8 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
LRCH3Q96II8 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
LRCH3Q96II8 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
LRCH3Q96II8 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
LRCH3Q96II8 GXYLT1P2-201ENST00000433312 1230 ntBASIC25.33■■□□□ 1.65
LRCH3Q96II8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
LRCH3Q96II8 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
LRCH3Q96II8 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
LRCH3Q96II8 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
LRCH3Q96II8 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.32■■□□□ 1.64
LRCH3Q96II8 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.32■■□□□ 1.64
LRCH3Q96II8 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.32■■□□□ 1.64
LRCH3Q96II8 AC092171.4-201ENST00000609130 632 ntBASIC25.32■■□□□ 1.64
LRCH3Q96II8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
LRCH3Q96II8 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
LRCH3Q96II8 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
LRCH3Q96II8 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.31■■□□□ 1.64
LRCH3Q96II8 EMC9-206ENST00000560403 872 ntTSL 2 BASIC25.31■■□□□ 1.64
LRCH3Q96II8 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
LRCH3Q96II8 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
LRCH3Q96II8 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
LRCH3Q96II8 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
LRCH3Q96II8 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.31■■□□□ 1.64
LRCH3Q96II8 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC25.3■■□□□ 1.64
LRCH3Q96II8 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.3■■□□□ 1.64
LRCH3Q96II8 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.3■■□□□ 1.64
LRCH3Q96II8 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
LRCH3Q96II8 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.3■■□□□ 1.64
LRCH3Q96II8 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
LRCH3Q96II8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
LRCH3Q96II8 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.3■■□□□ 1.64
LRCH3Q96II8 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.29■■□□□ 1.64
LRCH3Q96II8 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
LRCH3Q96II8 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
LRCH3Q96II8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.29■■□□□ 1.64
LRCH3Q96II8 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
LRCH3Q96II8 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.29■■□□□ 1.64
LRCH3Q96II8 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
LRCH3Q96II8 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
LRCH3Q96II8 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
LRCH3Q96II8 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC25.28■■□□□ 1.64
LRCH3Q96II8 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
LRCH3Q96II8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.28■■□□□ 1.64
LRCH3Q96II8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 424.6 ms