Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.23■■□□□ 1.47
TTC28Q96AY4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
TTC28Q96AY4 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.23■■□□□ 1.47
TTC28Q96AY4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.23■■□□□ 1.47
TTC28Q96AY4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
TTC28Q96AY4 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.23■■□□□ 1.47
TTC28Q96AY4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
TTC28Q96AY4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.23■■□□□ 1.47
TTC28Q96AY4 MPST-208ENST00000628507 698 ntTSL 5 BASIC24.23■■□□□ 1.47
TTC28Q96AY4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
TTC28Q96AY4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.23■■□□□ 1.47
TTC28Q96AY4 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
TTC28Q96AY4 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
TTC28Q96AY4 NTF6G-201ENST00000591094 616 ntBASIC24.22■■□□□ 1.47
TTC28Q96AY4 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC24.22■■□□□ 1.47
TTC28Q96AY4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
TTC28Q96AY4 AC027612.3-201ENST00000413684 1047 ntBASIC24.22■■□□□ 1.47
TTC28Q96AY4 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24.22■■□□□ 1.47
TTC28Q96AY4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC24.22■■□□□ 1.47
TTC28Q96AY4 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
TTC28Q96AY4 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
TTC28Q96AY4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
TTC28Q96AY4 DET1-205ENST00000558413 583 ntTSL 4 BASIC24.21■■□□□ 1.47
TTC28Q96AY4 AC008687.6-201ENST00000596318 630 ntBASIC24.21■■□□□ 1.47
TTC28Q96AY4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.21■■□□□ 1.47
TTC28Q96AY4 NME4-202ENST00000382940 766 ntTSL 3 BASIC24.21■■□□□ 1.47
TTC28Q96AY4 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
TTC28Q96AY4 NME4-211ENST00000620944 1193 ntTSL 2 BASIC24.21■■□□□ 1.47
TTC28Q96AY4 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.21■■□□□ 1.47
TTC28Q96AY4 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.21■■□□□ 1.47
TTC28Q96AY4 AC026185.1-201ENST00000445748 174 ntBASIC24.2■■□□□ 1.46
TTC28Q96AY4 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TTC28Q96AY4 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TTC28Q96AY4 AC142086.2-201ENST00000569753 217 ntBASIC24.2■■□□□ 1.46
TTC28Q96AY4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC24.2■■□□□ 1.46
TTC28Q96AY4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
TTC28Q96AY4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC24.19■■□□□ 1.46
TTC28Q96AY4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
TTC28Q96AY4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
TTC28Q96AY4 AL358852.1-201ENST00000623174 1268 ntBASIC24.19■■□□□ 1.46
TTC28Q96AY4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
TTC28Q96AY4 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
TTC28Q96AY4 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
TTC28Q96AY4 AL355802.2-201ENST00000402069 882 ntBASIC24.19■■□□□ 1.46
TTC28Q96AY4 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.19■■□□□ 1.46
TTC28Q96AY4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC24.19■■□□□ 1.46
TTC28Q96AY4 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
TTC28Q96AY4 TERF1P2-201ENST00000583350 1212 ntBASIC24.18■■□□□ 1.46
TTC28Q96AY4 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
TTC28Q96AY4 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
TTC28Q96AY4 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
TTC28Q96AY4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC24.18■■□□□ 1.46
TTC28Q96AY4 AL499627.2-201ENST00000606283 725 ntBASIC24.18■■□□□ 1.46
TTC28Q96AY4 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TTC28Q96AY4 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
TTC28Q96AY4 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
TTC28Q96AY4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.17■■□□□ 1.46
TTC28Q96AY4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.17■■□□□ 1.46
TTC28Q96AY4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.17■■□□□ 1.46
TTC28Q96AY4 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC24.17■■□□□ 1.46
TTC28Q96AY4 CCDC92B-201ENST00000575506 885 ntBASIC24.17■■□□□ 1.46
TTC28Q96AY4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC24.17■■□□□ 1.46
TTC28Q96AY4 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
TTC28Q96AY4 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
TTC28Q96AY4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.16■■□□□ 1.46
TTC28Q96AY4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
TTC28Q96AY4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
TTC28Q96AY4 AC136469.2-201ENST00000623944 1028 ntBASIC24.15■■□□□ 1.46
TTC28Q96AY4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
TTC28Q96AY4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC24.15■■□□□ 1.46
TTC28Q96AY4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC24.15■■□□□ 1.46
TTC28Q96AY4 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
TTC28Q96AY4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.14■■□□□ 1.46
TTC28Q96AY4 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TTC28Q96AY4 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC24.14■■□□□ 1.45
TTC28Q96AY4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24.14■■□□□ 1.45
TTC28Q96AY4 ST7-AS1-201ENST00000456775 1889 ntBASIC24.14■■□□□ 1.45
TTC28Q96AY4 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.14■■□□□ 1.45
TTC28Q96AY4 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC24.14■■□□□ 1.45
TTC28Q96AY4 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.13■■□□□ 1.45
TTC28Q96AY4 AC006015.1-201ENST00000429970 570 ntBASIC24.13■■□□□ 1.45
TTC28Q96AY4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
TTC28Q96AY4 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC24.13■■□□□ 1.45
TTC28Q96AY4 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TTC28Q96AY4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
TTC28Q96AY4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC24.13■■□□□ 1.45
TTC28Q96AY4 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TTC28Q96AY4 CROCCP5-201ENST00000436658 830 ntBASIC24.12■■□□□ 1.45
TTC28Q96AY4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC24.12■■□□□ 1.45
TTC28Q96AY4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TTC28Q96AY4 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TTC28Q96AY4 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.12■■□□□ 1.45
TTC28Q96AY4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TTC28Q96AY4 AL139393.2-201ENST00000608721 2025 ntBASIC24.12■■□□□ 1.45
TTC28Q96AY4 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24.11■■□□□ 1.45
TTC28Q96AY4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.11■■□□□ 1.45
TTC28Q96AY4 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
TTC28Q96AY4 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.11■■□□□ 1.45
TTC28Q96AY4 BX842568.3-201ENST00000418104 571 ntBASIC24.11■■□□□ 1.45
TTC28Q96AY4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms