Protein–RNA interactions for Protein: Q5SRH9

TTC39A, Tetratricopeptide repeat protein 39A, humanhuman

Predictions only

Length 613 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39AQ5SRH9 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
TTC39AQ5SRH9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC28.38■■■□□ 2.13
TTC39AQ5SRH9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC28.37■■■□□ 2.13
TTC39AQ5SRH9 GRAMD4P7-201ENST00000578182 1232 ntBASIC28.37■■■□□ 2.13
TTC39AQ5SRH9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
TTC39AQ5SRH9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
TTC39AQ5SRH9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC28.36■■■□□ 2.13
TTC39AQ5SRH9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
TTC39AQ5SRH9 LBH-205ENST00000407930 756 ntTSL 2 BASIC28.36■■■□□ 2.13
TTC39AQ5SRH9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC28.36■■■□□ 2.13
TTC39AQ5SRH9 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
TTC39AQ5SRH9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 KRT16P3-201ENST00000439127 1283 ntBASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
TTC39AQ5SRH9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC28.34■■■□□ 2.13
TTC39AQ5SRH9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
TTC39AQ5SRH9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC28.34■■■□□ 2.13
TTC39AQ5SRH9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC28.34■■■□□ 2.13
TTC39AQ5SRH9 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
TTC39AQ5SRH9 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 AC020928.2-201ENST00000588717 2197 ntBASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
TTC39AQ5SRH9 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC28.32■■■□□ 2.12
TTC39AQ5SRH9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC28.31■■■□□ 2.12
TTC39AQ5SRH9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC28.31■■■□□ 2.12
TTC39AQ5SRH9 AC131212.1-201ENST00000613771 668 ntBASIC28.31■■■□□ 2.12
TTC39AQ5SRH9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC28.31■■■□□ 2.12
TTC39AQ5SRH9 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
TTC39AQ5SRH9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
TTC39AQ5SRH9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
TTC39AQ5SRH9 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
TTC39AQ5SRH9 MTDHP2-201ENST00000601468 714 ntBASIC28.3■■■□□ 2.12
TTC39AQ5SRH9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC28.3■■■□□ 2.12
TTC39AQ5SRH9 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 SNX5-217ENST00000606557 1087 ntBASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 AC010997.5-201ENST00000609182 354 ntBASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
TTC39AQ5SRH9 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
TTC39AQ5SRH9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC28.28■■■□□ 2.12
TTC39AQ5SRH9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC28.28■■■□□ 2.12
TTC39AQ5SRH9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
TTC39AQ5SRH9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
TTC39AQ5SRH9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC28.28■■■□□ 2.12
TTC39AQ5SRH9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC28.28■■■□□ 2.12
TTC39AQ5SRH9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
TTC39AQ5SRH9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC28.27■■■□□ 2.12
TTC39AQ5SRH9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC28.27■■■□□ 2.12
TTC39AQ5SRH9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
TTC39AQ5SRH9 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC28.27■■■□□ 2.12
TTC39AQ5SRH9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
TTC39AQ5SRH9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
TTC39AQ5SRH9 AC142381.3-201ENST00000568208 1670 ntBASIC28.26■■■□□ 2.12
TTC39AQ5SRH9 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
TTC39AQ5SRH9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC28.26■■■□□ 2.11
TTC39AQ5SRH9 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
TTC39AQ5SRH9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
TTC39AQ5SRH9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC28.26■■■□□ 2.11
TTC39AQ5SRH9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
TTC39AQ5SRH9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms