Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
FOXA1P55317 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.54■■□□□ 1.2
FOXA1P55317 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
FOXA1P55317 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.53■■□□□ 1.2
FOXA1P55317 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
FOXA1P55317 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.53■■□□□ 1.2
FOXA1P55317 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
FOXA1P55317 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
FOXA1P55317 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXA1P55317 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXA1P55317 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXA1P55317 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.52■■□□□ 1.2
FOXA1P55317 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.52■■□□□ 1.2
FOXA1P55317 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXA1P55317 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
FOXA1P55317 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
FOXA1P55317 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.19
FOXA1P55317 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
FOXA1P55317 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXA1P55317 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
FOXA1P55317 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.51■■□□□ 1.19
FOXA1P55317 RPS2P7-201ENST00000447334 885 ntBASIC22.51■■□□□ 1.19
FOXA1P55317 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
FOXA1P55317 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
FOXA1P55317 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
FOXA1P55317 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
FOXA1P55317 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
FOXA1P55317 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
FOXA1P55317 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
FOXA1P55317 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
FOXA1P55317 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
FOXA1P55317 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
FOXA1P55317 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXA1P55317 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC22.5■■□□□ 1.19
FOXA1P55317 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXA1P55317 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXA1P55317 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.5■■□□□ 1.19
FOXA1P55317 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXA1P55317 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXA1P55317 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.49■■□□□ 1.19
FOXA1P55317 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
FOXA1P55317 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
FOXA1P55317 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.49■■□□□ 1.19
FOXA1P55317 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
FOXA1P55317 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.48■■□□□ 1.19
FOXA1P55317 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
FOXA1P55317 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
FOXA1P55317 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
FOXA1P55317 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
FOXA1P55317 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.48■■□□□ 1.19
FOXA1P55317 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
FOXA1P55317 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
FOXA1P55317 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
FOXA1P55317 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.48■■□□□ 1.19
FOXA1P55317 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
FOXA1P55317 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
FOXA1P55317 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.48■■□□□ 1.19
FOXA1P55317 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.48■■□□□ 1.19
FOXA1P55317 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
FOXA1P55317 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.47■■□□□ 1.19
FOXA1P55317 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
FOXA1P55317 AC068473.5-201ENST00000616428 2072 ntBASIC22.46■■□□□ 1.19
FOXA1P55317 DUSP8P5-201ENST00000422884 1815 ntBASIC22.46■■□□□ 1.19
FOXA1P55317 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
FOXA1P55317 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.46■■□□□ 1.19
FOXA1P55317 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.46■■□□□ 1.19
FOXA1P55317 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.46■■□□□ 1.19
FOXA1P55317 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.45■■□□□ 1.19
FOXA1P55317 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
FOXA1P55317 AC018755.3-202ENST00000596210 929 ntBASIC22.45■■□□□ 1.18
FOXA1P55317 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.45■■□□□ 1.18
FOXA1P55317 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
FOXA1P55317 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
FOXA1P55317 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
FOXA1P55317 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.45■■□□□ 1.18
FOXA1P55317 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.45■■□□□ 1.18
FOXA1P55317 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.43■■□□□ 1.18
FOXA1P55317 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
FOXA1P55317 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.43■■□□□ 1.18
FOXA1P55317 DUX4L9-201ENST00000449051 1259 ntBASIC22.43■■□□□ 1.18
FOXA1P55317 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.43■■□□□ 1.18
FOXA1P55317 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.43■■□□□ 1.18
FOXA1P55317 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
FOXA1P55317 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.43■■□□□ 1.18
FOXA1P55317 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
FOXA1P55317 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
FOXA1P55317 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
FOXA1P55317 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.42■■□□□ 1.18
FOXA1P55317 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
FOXA1P55317 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
FOXA1P55317 AC087393.1-201ENST00000582896 145 ntBASIC22.42■■□□□ 1.18
FOXA1P55317 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
FOXA1P55317 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
FOXA1P55317 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
FOXA1P55317 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
FOXA1P55317 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
FOXA1P55317 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
FOXA1P55317 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
FOXA1P55317 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
FOXA1P55317 AC090877.2-201ENST00000558441 1738 ntBASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms