Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SOX3P41225 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SOX3P41225 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SOX3P41225 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
SOX3P41225 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
SOX3P41225 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.74■■□□□ 1.07
SOX3P41225 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SOX3P41225 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SOX3P41225 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SOX3P41225 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SOX3P41225 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
SOX3P41225 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SOX3P41225 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SOX3P41225 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SOX3P41225 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SOX3P41225 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SOX3P41225 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
SOX3P41225 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SOX3P41225 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SOX3P41225 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
SOX3P41225 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SOX3P41225 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.73■■□□□ 1.07
SOX3P41225 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SOX3P41225 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.72■■□□□ 1.07
SOX3P41225 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.72■■□□□ 1.07
SOX3P41225 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
SOX3P41225 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SOX3P41225 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
SOX3P41225 AC133561.1-201ENST00000568600 2415 ntBASIC21.71■■□□□ 1.07
SOX3P41225 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SOX3P41225 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SOX3P41225 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SOX3P41225 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SOX3P41225 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SOX3P41225 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.71■■□□□ 1.07
SOX3P41225 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SOX3P41225 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SOX3P41225 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SOX3P41225 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.7■■□□□ 1.07
SOX3P41225 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SOX3P41225 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SOX3P41225 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SOX3P41225 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SOX3P41225 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.7■■□□□ 1.06
SOX3P41225 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SOX3P41225 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SOX3P41225 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SOX3P41225 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SOX3P41225 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SOX3P41225 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SOX3P41225 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
SOX3P41225 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SOX3P41225 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SOX3P41225 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SOX3P41225 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SOX3P41225 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.69■■□□□ 1.06
SOX3P41225 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SOX3P41225 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SOX3P41225 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SOX3P41225 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.68■■□□□ 1.06
SOX3P41225 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.68■■□□□ 1.06
SOX3P41225 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SOX3P41225 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.68■■□□□ 1.06
SOX3P41225 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SOX3P41225 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SOX3P41225 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SOX3P41225 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.67■■□□□ 1.06
SOX3P41225 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SOX3P41225 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SOX3P41225 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SOX3P41225 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.67■■□□□ 1.06
SOX3P41225 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
SOX3P41225 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
SOX3P41225 AC011551.1-201ENST00000614101 683 ntBASIC21.67■■□□□ 1.06
SOX3P41225 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SOX3P41225 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SOX3P41225 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.66■■□□□ 1.06
SOX3P41225 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SOX3P41225 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.66■■□□□ 1.06
SOX3P41225 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 AC239859.2-201ENST00000444165 318 ntBASIC21.66■■□□□ 1.06
SOX3P41225 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.66■■□□□ 1.06
SOX3P41225 MIR4281-201ENST00000580852 62 ntBASIC21.66■■□□□ 1.06
SOX3P41225 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.66■■□□□ 1.06
SOX3P41225 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SOX3P41225 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.65■■□□□ 1.06
SOX3P41225 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SOX3P41225 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SOX3P41225 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SOX3P41225 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SOX3P41225 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SOX3P41225 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms