Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC29.6■■■□□ 2.33
RFC4P35249 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC29.6■■■□□ 2.33
RFC4P35249 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.6■■■□□ 2.33
RFC4P35249 AC097381.1-201ENST00000429019 1296 ntBASIC29.59■■■□□ 2.33
RFC4P35249 SYT6-210ENST00000641643 1587 ntBASIC29.59■■■□□ 2.33
RFC4P35249 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
RFC4P35249 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
RFC4P35249 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
RFC4P35249 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
RFC4P35249 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
RFC4P35249 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
RFC4P35249 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
RFC4P35249 AC005703.6-201ENST00000623265 1329 ntBASIC29.58■■■□□ 2.33
RFC4P35249 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC29.57■■■□□ 2.32
RFC4P35249 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
RFC4P35249 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC29.57■■■□□ 2.32
RFC4P35249 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC29.57■■■□□ 2.32
RFC4P35249 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
RFC4P35249 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
RFC4P35249 MIR4767-201ENST00000582827 78 ntBASIC29.56■■■□□ 2.32
RFC4P35249 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
RFC4P35249 AC092171.4-201ENST00000609130 632 ntBASIC29.55■■■□□ 2.32
RFC4P35249 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
RFC4P35249 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
RFC4P35249 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.54■■■□□ 2.32
RFC4P35249 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
RFC4P35249 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
RFC4P35249 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
RFC4P35249 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC29.54■■■□□ 2.32
RFC4P35249 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC29.53■■■□□ 2.32
RFC4P35249 AC097639.1-201ENST00000565519 1891 ntBASIC29.53■■■□□ 2.32
RFC4P35249 MAG-206ENST00000597035 542 ntTSL 4 BASIC29.53■■■□□ 2.32
RFC4P35249 AC087623.3-201ENST00000607047 1098 ntBASIC29.53■■■□□ 2.32
RFC4P35249 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC29.53■■■□□ 2.32
RFC4P35249 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
RFC4P35249 PTMA-205ENST00000410064 814 ntTSL 2 BASIC29.52■■■□□ 2.32
RFC4P35249 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC29.52■■■□□ 2.32
RFC4P35249 CA15P2-201ENST00000611168 834 ntBASIC29.52■■■□□ 2.32
RFC4P35249 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC29.52■■■□□ 2.32
RFC4P35249 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.52■■■□□ 2.32
RFC4P35249 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RFC4P35249 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.32
RFC4P35249 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
RFC4P35249 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
RFC4P35249 AL162430.1-201ENST00000480705 870 ntBASIC29.51■■■□□ 2.31
RFC4P35249 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
RFC4P35249 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
RFC4P35249 AC142086.6-201ENST00000621154 1765 ntBASIC29.51■■■□□ 2.31
RFC4P35249 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
RFC4P35249 RASA4CP-201ENST00000424092 1398 ntBASIC29.51■■■□□ 2.31
RFC4P35249 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC29.51■■■□□ 2.31
RFC4P35249 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
RFC4P35249 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
RFC4P35249 PLD4-205ENST00000553861 667 ntTSL 2 BASIC29.5■■■□□ 2.31
RFC4P35249 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
RFC4P35249 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
RFC4P35249 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC29.49■■■□□ 2.31
RFC4P35249 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
RFC4P35249 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
RFC4P35249 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
RFC4P35249 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
RFC4P35249 GLI3-203ENST00000437480 451 ntTSL 2 BASIC29.49■■■□□ 2.31
RFC4P35249 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
RFC4P35249 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
RFC4P35249 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC29.48■■■□□ 2.31
RFC4P35249 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC29.48■■■□□ 2.31
RFC4P35249 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC29.48■■■□□ 2.31
RFC4P35249 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
RFC4P35249 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.48■■■□□ 2.31
RFC4P35249 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
RFC4P35249 SERBP1P1-201ENST00000396021 1160 ntBASIC29.47■■■□□ 2.31
RFC4P35249 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.47■■■□□ 2.31
RFC4P35249 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
RFC4P35249 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
RFC4P35249 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
RFC4P35249 AC096887.2-201ENST00000623443 1957 ntBASIC29.46■■■□□ 2.31
RFC4P35249 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC29.45■■■□□ 2.31
RFC4P35249 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
RFC4P35249 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
RFC4P35249 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
RFC4P35249 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
RFC4P35249 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
RFC4P35249 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
RFC4P35249 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC29.44■■■□□ 2.3
RFC4P35249 REST-206ENST00000612429 1376 ntTSL 5 BASIC29.44■■■□□ 2.3
RFC4P35249 REST-207ENST00000616975 1370 ntTSL 5 BASIC29.44■■■□□ 2.3
RFC4P35249 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
RFC4P35249 AC027682.1-201ENST00000562846 899 ntBASIC29.44■■■□□ 2.3
RFC4P35249 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
RFC4P35249 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
RFC4P35249 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC29.43■■■□□ 2.3
RFC4P35249 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC29.43■■■□□ 2.3
RFC4P35249 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
RFC4P35249 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
RFC4P35249 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
RFC4P35249 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
RFC4P35249 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
RFC4P35249 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
RFC4P35249 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC29.42■■■□□ 2.3
RFC4P35249 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms