Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC28.42■■■□□ 2.14
COL4A5P29400 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
COL4A5P29400 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC28.41■■■□□ 2.14
COL4A5P29400 PARL-206ENST00000435888 1098 ntTSL 5 BASIC28.4■■■□□ 2.14
COL4A5P29400 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
COL4A5P29400 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC28.4■■■□□ 2.14
COL4A5P29400 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC28.4■■■□□ 2.14
COL4A5P29400 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL4A5P29400 AC004448.1-201ENST00000458332 883 ntBASIC28.39■■■□□ 2.14
COL4A5P29400 CA15P2-201ENST00000611168 834 ntBASIC28.39■■■□□ 2.14
COL4A5P29400 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL4A5P29400 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC28.39■■■□□ 2.14
COL4A5P29400 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC28.39■■■□□ 2.14
COL4A5P29400 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
COL4A5P29400 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC28.39■■■□□ 2.14
COL4A5P29400 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC28.39■■■□□ 2.14
COL4A5P29400 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
COL4A5P29400 SERBP1P1-201ENST00000396021 1160 ntBASIC28.38■■■□□ 2.13
COL4A5P29400 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
COL4A5P29400 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
COL4A5P29400 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC28.37■■■□□ 2.13
COL4A5P29400 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
COL4A5P29400 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
COL4A5P29400 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC28.36■■■□□ 2.13
COL4A5P29400 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
COL4A5P29400 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
COL4A5P29400 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC28.36■■■□□ 2.13
COL4A5P29400 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC28.36■■■□□ 2.13
COL4A5P29400 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
COL4A5P29400 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC28.36■■■□□ 2.13
COL4A5P29400 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL4A5P29400 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC28.35■■■□□ 2.13
COL4A5P29400 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC28.35■■■□□ 2.13
COL4A5P29400 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
COL4A5P29400 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.35■■■□□ 2.13
COL4A5P29400 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL4A5P29400 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL4A5P29400 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL4A5P29400 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC28.35■■■□□ 2.13
COL4A5P29400 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
COL4A5P29400 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
COL4A5P29400 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
COL4A5P29400 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
COL4A5P29400 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
COL4A5P29400 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
COL4A5P29400 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL4A5P29400 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL4A5P29400 RASA4CP-201ENST00000424092 1398 ntBASIC28.33■■■□□ 2.13
COL4A5P29400 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.33■■■□□ 2.13
COL4A5P29400 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL4A5P29400 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC28.32■■■□□ 2.12
COL4A5P29400 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL4A5P29400 DUX4L19-201ENST00000557448 1267 ntBASIC28.32■■■□□ 2.12
COL4A5P29400 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL4A5P29400 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
COL4A5P29400 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC28.32■■■□□ 2.12
COL4A5P29400 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL4A5P29400 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC28.31■■■□□ 2.12
COL4A5P29400 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.31■■■□□ 2.12
COL4A5P29400 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC28.31■■■□□ 2.12
COL4A5P29400 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.31■■■□□ 2.12
COL4A5P29400 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
COL4A5P29400 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC28.3■■■□□ 2.12
COL4A5P29400 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC28.3■■■□□ 2.12
COL4A5P29400 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
COL4A5P29400 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
COL4A5P29400 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
COL4A5P29400 SYT6-210ENST00000641643 1587 ntBASIC28.3■■■□□ 2.12
COL4A5P29400 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC28.29■■■□□ 2.12
COL4A5P29400 AC027682.1-201ENST00000562846 899 ntBASIC28.29■■■□□ 2.12
COL4A5P29400 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC28.29■■■□□ 2.12
COL4A5P29400 ERN1-208ENST00000606895 2068 ntBASIC28.29■■■□□ 2.12
COL4A5P29400 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
COL4A5P29400 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
COL4A5P29400 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A5P29400 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC28.29■■■□□ 2.12
COL4A5P29400 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.28■■■□□ 2.12
COL4A5P29400 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL4A5P29400 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
COL4A5P29400 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC28.28■■■□□ 2.12
COL4A5P29400 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
COL4A5P29400 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL4A5P29400 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
COL4A5P29400 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC28.27■■■□□ 2.12
COL4A5P29400 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
COL4A5P29400 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC28.27■■■□□ 2.12
COL4A5P29400 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC28.27■■■□□ 2.12
COL4A5P29400 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
COL4A5P29400 AC005703.6-201ENST00000623265 1329 ntBASIC28.27■■■□□ 2.12
COL4A5P29400 JTB-203ENST00000368589 1216 ntTSL 2 BASIC28.26■■■□□ 2.12
COL4A5P29400 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC28.26■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms