Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.62■□□□□ 0.73
USF1P22415 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
USF1P22415 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.62■□□□□ 0.73
USF1P22415 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
USF1P22415 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.62■□□□□ 0.73
USF1P22415 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
USF1P22415 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.61■□□□□ 0.73
USF1P22415 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.61■□□□□ 0.73
USF1P22415 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USF1P22415 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USF1P22415 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.61■□□□□ 0.73
USF1P22415 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
USF1P22415 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.61■□□□□ 0.73
USF1P22415 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.61■□□□□ 0.73
USF1P22415 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
USF1P22415 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
USF1P22415 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
USF1P22415 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USF1P22415 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
USF1P22415 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USF1P22415 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USF1P22415 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USF1P22415 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USF1P22415 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.6■□□□□ 0.73
USF1P22415 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.6■□□□□ 0.73
USF1P22415 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USF1P22415 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USF1P22415 FOXO3B-201ENST00000395675 1928 ntBASIC19.6■□□□□ 0.73
USF1P22415 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USF1P22415 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USF1P22415 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF1P22415 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USF1P22415 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.59■□□□□ 0.73
USF1P22415 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.59■□□□□ 0.73
USF1P22415 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USF1P22415 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF1P22415 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF1P22415 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.59■□□□□ 0.73
USF1P22415 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USF1P22415 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USF1P22415 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USF1P22415 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.58■□□□□ 0.72
USF1P22415 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.58■□□□□ 0.72
USF1P22415 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
USF1P22415 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USF1P22415 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.58■□□□□ 0.72
USF1P22415 AF131216.4-201ENST00000638924 1588 ntBASIC19.57■□□□□ 0.72
USF1P22415 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USF1P22415 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USF1P22415 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USF1P22415 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USF1P22415 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.57■□□□□ 0.72
USF1P22415 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.57■□□□□ 0.72
USF1P22415 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
USF1P22415 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USF1P22415 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USF1P22415 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.57■□□□□ 0.72
USF1P22415 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USF1P22415 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.56■□□□□ 0.72
USF1P22415 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USF1P22415 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USF1P22415 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.56■□□□□ 0.72
USF1P22415 AC096631.2-201ENST00000436136 790 ntBASIC19.56■□□□□ 0.72
USF1P22415 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USF1P22415 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.56■□□□□ 0.72
USF1P22415 MIR4466-201ENST00000606121 54 ntBASIC19.56■□□□□ 0.72
USF1P22415 AC110285.6-201ENST00000617652 491 ntBASIC19.56■□□□□ 0.72
USF1P22415 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USF1P22415 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USF1P22415 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USF1P22415 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
USF1P22415 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.55■□□□□ 0.72
USF1P22415 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USF1P22415 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
USF1P22415 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.55■□□□□ 0.72
USF1P22415 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USF1P22415 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.55■□□□□ 0.72
USF1P22415 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USF1P22415 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USF1P22415 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.54■□□□□ 0.72
USF1P22415 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USF1P22415 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
USF1P22415 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USF1P22415 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.54■□□□□ 0.72
USF1P22415 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USF1P22415 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.54■□□□□ 0.72
USF1P22415 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.54■□□□□ 0.72
USF1P22415 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
USF1P22415 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USF1P22415 AC005837.3-201ENST00000612163 286 ntBASIC19.53■□□□□ 0.72
USF1P22415 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.53■□□□□ 0.72
USF1P22415 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USF1P22415 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USF1P22415 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
USF1P22415 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USF1P22415 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
USF1P22415 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.52■□□□□ 0.72
USF1P22415 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.52■□□□□ 0.72
USF1P22415 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
USF1P22415 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms